Detailed information NTG0053438

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: SCV20265_RS00100
• Genome accession: NC_023149
• Coordinates: 21223..22248 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa SCV20265
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16223..27248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCV20265_RS00075 (SCV20265_0014)	-	16411..16728 (-)	318	WP_023123215.1	tetratricopeptide repeat protein	-
SCV20265_RS00080 (SCV20265_0015)	trkA	16877..18250 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
SCV20265_RS00085 (SCV20265_0016)	rsmB	18278..19582 (-)	1305	WP_023092224.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
SCV20265_RS00090 (SCV20265_0017)	fmt	19579..20523 (-)	945	WP_023123214.1	methionyl-tRNA formyltransferase	-
SCV20265_RS00095 (SCV20265_0018)	def	20578..21084 (-)	507	WP_003107059.1	peptide deformylase	-
SCV20265_RS00100 (SCV20265_0019)	tsaP	21223..22248 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
SCV20265_RS00105 (SCV20265_0020)	dprA	22383..23471 (+)	1089	WP_023123213.1	DNA-processing protein DprA	Machinery gene
SCV20265_RS00110 (SCV20265_0021)	-	23512..24069 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
SCV20265_RS00115 (SCV20265_0022)	-	24079..25056 (-)	978	WP_003097303.1	NADPH:quinone reductase	-
SCV20265_RS00120 (SCV20265_0023)	hemF	25247..26164 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
SCV20265_RS00125 (SCV20265_0024)	aroE	26222..27046 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=53438 SCV20265_RS00100 WP_003097294.1 21223..22248(+) (tsaP) [Pseudomonas aeruginosa SCV20265]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=53438 SCV20265_RS00100 WP_003097294.1 21223..22248(+) (tsaP) [Pseudomonas aeruginosa SCV20265]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393