Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   JR311_RS12280 Genome accession   NZ_CP069391
Coordinates   2569693..2570493 (-) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus velezensis strain Sam8H1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2564693..2575493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS12250 (JR311_12250) - 2565240..2565872 (+) 633 WP_014418348.1 helix-turn-helix domain-containing protein -
  JR311_RS12255 (JR311_12255) - 2566163..2566300 (+) 138 WP_014470646.1 hypothetical protein -
  JR311_RS12260 (JR311_12260) - 2566394..2567512 (+) 1119 WP_204530620.1 NADH-dependent flavin oxidoreductase -
  JR311_RS12265 (JR311_12265) - 2567638..2567850 (+) 213 WP_003153183.1 spore germination protein -
  JR311_RS12270 (JR311_12270) - 2567976..2568188 (+) 213 WP_014305392.1 spore germination protein -
  JR311_RS12275 (JR311_12275) alr 2568364..2569545 (+) 1182 WP_204529780.1 alanine racemase -
  JR311_RS12280 (JR311_12280) spo0A 2569693..2570493 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  JR311_RS12285 (JR311_12285) spoIVB 2570774..2572054 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  JR311_RS12290 (JR311_12290) recN 2572218..2573948 (-) 1731 WP_077722583.1 DNA repair protein RecN Machinery gene
  JR311_RS12295 (JR311_12295) ahrC 2573980..2574429 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  JR311_RS12300 (JR311_12300) - 2574526..2575371 (-) 846 WP_204529781.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=534375 JR311_RS12280 WP_003153177.1 2569693..2570493(-) (spo0A) [Bacillus velezensis strain Sam8H1]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=534375 JR311_RS12280 WP_003153177.1 2569693..2570493(-) (spo0A) [Bacillus velezensis strain Sam8H1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCCGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGGTATACCGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAGTTCATCGCGATGGTTGCGGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97