Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   U722_RS19010 Genome accession   NC_023073
Coordinates   3933176..3934027 (-) Length   283 a.a.
NCBI ID   WP_004392966.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3928176..3939027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS18985 (U722_20200) - 3928345..3930348 (-) 2004 WP_015387408.1 molybdopterin-dependent oxidoreductase -
  U722_RS18990 (U722_20205) - 3930395..3930601 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  U722_RS18995 (U722_20210) - 3930687..3931712 (-) 1026 WP_088005468.1 hypothetical protein -
  U722_RS19000 (U722_20215) - 3931995..3932357 (+) 363 Protein_3775 N-acetyltransferase family protein -
  U722_RS19005 (U722_20220) yyaC 3932532..3933146 (+) 615 WP_004392969.1 spore protease YyaC -
  U722_RS19010 (U722_20225) spo0J 3933176..3934027 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein Regulator
  U722_RS19015 (U722_20230) soj 3934020..3934781 (-) 762 WP_004392964.1 sporulation initiation inhibitor protein Soj -
  U722_RS19020 (U722_20235) noc 3935080..3935931 (-) 852 WP_004392962.1 nucleoid occlusion protein -
  U722_RS19025 (U722_20240) rsmG 3936053..3936772 (-) 720 WP_004392961.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  U722_RS19030 (U722_20245) mnmG 3936786..3938672 (-) 1887 WP_004392959.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 32351.29 Da        Isoelectric Point: 8.3471

>NTDB_id=53437 U722_RS19010 WP_004392966.1 3933176..3934027(-) (spo0J) [Bacillus amyloliquefaciens LFB112]
MAKGGLGKGINALFNQVDLSEETVEEIKISDLRPNPYQPRKQFDDESLAELKESIIQHGILQPIIVRKSLKGYDIVAGER
RYRAAKLAGKETVPAIVRDLSESLMREIALLENLQREDLSPLEEALAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLL
TLPESIQNLIAEGTLSMGHGRTLLGLKNKNKLEPLVKKVVEEQLNVRQLEQLIQQLNNNVPRETKKKEPVQDVVLKERES
YLQNYFGTTVNIKRQKKKGKIEIEFFSNEDLERILELLSEREA

Nucleotide


Download         Length: 852 bp        

>NTDB_id=53437 U722_RS19010 WP_004392966.1 3933176..3934027(-) (spo0J) [Bacillus amyloliquefaciens LFB112]
ATGGCTAAAGGCGGGCTCGGAAAAGGGATTAACGCGTTGTTTAATCAGGTTGATTTGTCTGAAGAGACAGTGGAAGAAAT
TAAAATCAGTGATTTACGCCCCAATCCTTATCAGCCAAGAAAACAATTTGATGATGAGTCATTAGCTGAACTGAAGGAAT
CCATCATTCAGCATGGCATTCTTCAGCCCATTATCGTGAGAAAATCATTGAAGGGCTATGATATTGTAGCCGGCGAACGC
CGTTACCGCGCCGCAAAACTTGCCGGTAAAGAGACAGTGCCGGCTATCGTGCGGGATTTATCTGAATCGCTGATGCGGGA
AATCGCTCTTTTGGAAAACCTTCAGCGTGAAGACTTATCACCGCTTGAAGAAGCTCTGGCATATGACTCACTGCTGAAGC
ATTTGGATTTAACCCAGGAACAGCTCGCTAAACGGCTCGGGAAAAGCAGGCCTCATATTGCCAACCATTTAAGACTGCTG
ACGCTGCCGGAAAGCATCCAGAACCTCATTGCAGAAGGTACGTTATCCATGGGACACGGCAGAACCTTGCTTGGCTTGAA
AAATAAAAACAAGCTTGAACCGCTTGTGAAGAAAGTGGTTGAAGAACAGCTGAACGTCCGCCAGCTTGAGCAGCTGATTC
AGCAGTTAAACAACAATGTTCCACGTGAAACAAAGAAAAAAGAACCTGTTCAAGATGTTGTGTTAAAAGAGCGGGAATCG
TATTTGCAAAATTACTTCGGAACAACAGTCAATATTAAGAGACAAAAGAAAAAAGGGAAGATTGAGATTGAGTTTTTCTC
AAATGAAGATCTTGAACGTATCCTGGAACTATTGTCCGAAAGAGAAGCGTAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(25-113)

HTH domain found in ParB protein (HTH_ParB)

(164-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.538

91.873

0.382

Multiple sequence alignment