Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JR311_RS07980 Genome accession   NZ_CP069391
Coordinates   1545172..1545636 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain Sam8H1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540172..1550636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS07960 (JR311_07960) - 1540653..1542473 (+) 1821 WP_156735110.1 PAS domain-containing protein -
  JR311_RS07965 (JR311_07965) - 1542454..1543667 (-) 1214 Protein_1524 aminotransferase A -
  JR311_RS07970 (JR311_07970) - 1543868..1544029 (-) 162 WP_164672396.1 hypothetical protein -
  JR311_RS07975 (JR311_07975) cheV 1544218..1545129 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  JR311_RS07980 (JR311_07980) kre 1545172..1545636 (-) 465 WP_003154622.1 YkyB family protein Regulator
  JR311_RS07985 (JR311_07985) - 1545759..1547051 (-) 1293 WP_204530514.1 MFS transporter -
  JR311_RS07990 (JR311_07990) - 1547127..1547621 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  JR311_RS07995 (JR311_07995) - 1547696..1548559 (-) 864 WP_204530515.1 metallophosphoesterase -
  JR311_RS08000 (JR311_08000) fadH 1548703..1549467 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  JR311_RS20740 - 1549578..1550125 (+) 548 Protein_1532 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=534367 JR311_RS07980 WP_003154622.1 1545172..1545636(-) (kre) [Bacillus velezensis strain Sam8H1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=534367 JR311_RS07980 WP_003154622.1 1545172..1545636(-) (kre) [Bacillus velezensis strain Sam8H1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929