Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JR311_RS00965 Genome accession   NZ_CP069391
Coordinates   179125..179415 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain Sam8H1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 174125..184415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR311_RS00925 (JR311_00925) darA 174142..174471 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  JR311_RS00930 (JR311_00930) - 174484..174924 (+) 441 WP_004264730.1 YaaR family protein -
  JR311_RS00935 (JR311_00935) holB 174936..175925 (+) 990 WP_138091485.1 DNA polymerase III subunit delta' -
  JR311_RS00940 (JR311_00940) ricT 175928..176755 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  JR311_RS00945 (JR311_00945) yabA 176770..177129 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  JR311_RS00950 (JR311_00950) - 177190..177933 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JR311_RS00955 (JR311_00955) - 177920..178219 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  JR311_RS00960 (JR311_00960) rsmI 178194..179075 (+) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JR311_RS00965 (JR311_00965) abrB 179125..179415 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  JR311_RS00970 (JR311_00970) metG 179898..181889 (+) 1992 WP_053573816.1 methionine--tRNA ligase -
  JR311_RS00975 (JR311_00975) - 181965..182732 (+) 768 WP_032868379.1 TatD family hydrolase -
  JR311_RS00980 (JR311_00980) - 182867..184192 (+) 1326 WP_204530163.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=534341 JR311_RS00965 WP_169510469.1 179125..179415(-) (abrB) [Bacillus velezensis strain Sam8H1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=534341 JR311_RS00965 WP_169510469.1 179125..179415(-) (abrB) [Bacillus velezensis strain Sam8H1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979