Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   U722_RS18670 Genome accession   NC_023073
Coordinates   3873281..3874075 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3868281..3879075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS18650 (U722_19840) - 3868615..3869622 (-) 1008 WP_041482388.1 ThiF family adenylyltransferase -
  U722_RS18655 (U722_19845) - 3869854..3871272 (-) 1419 WP_024086029.1 sensor histidine kinase -
  U722_RS18660 (U722_19850) - 3871269..3871481 (-) 213 WP_024086030.1 winged helix-turn-helix domain-containing protein -
  U722_RS18665 (U722_19860) htrA 3871998..3873194 (-) 1197 WP_015387437.1 S1C family serine protease Regulator
  U722_RS18670 (U722_19865) vicX 3873281..3874075 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  U722_RS18675 (U722_19870) - 3874090..3874929 (-) 840 WP_004393108.1 two-component system regulatory protein YycI -
  U722_RS18680 (U722_19875) yycH 3874916..3876274 (-) 1359 WP_004393107.1 two-component system activity regulator YycH -
  U722_RS18685 (U722_19880) walK 3876264..3878099 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  U722_RS18690 (U722_19885) walR 3878106..3878813 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=53434 U722_RS18670 WP_004393110.1 3873281..3874075(-) (vicX) [Bacillus amyloliquefaciens LFB112]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=53434 U722_RS18670 WP_004393110.1 3873281..3874075(-) (vicX) [Bacillus amyloliquefaciens LFB112]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCATTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTACCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTTGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTAAAATCTTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGATATGTGAGCGACAGAATGAAAGGCATCATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGATGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATTCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment