Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JRU67_RS12270 Genome accession   NZ_CP069389
Coordinates   2399430..2400401 (-) Length   323 a.a.
NCBI ID   WP_275431249.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain GDQ20D70P     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2394430..2405401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRU67_RS12245 (JRU67_12245) - 2394985..2395506 (+) 522 WP_107596544.1 GrpB family protein -
  JRU67_RS12250 (JRU67_12250) murB 2395573..2396493 (+) 921 WP_204178179.1 UDP-N-acetylmuramate dehydrogenase -
  JRU67_RS12255 (JRU67_12255) - 2396538..2397575 (-) 1038 WP_025905420.1 ABC transporter substrate-binding protein -
  JRU67_RS12260 (JRU67_12260) - 2397678..2398478 (-) 801 WP_204178180.1 ATP-binding cassette domain-containing protein -
  JRU67_RS12265 (JRU67_12265) - 2398475..2399440 (-) 966 WP_025905418.1 iron chelate uptake ABC transporter family permease subunit -
  JRU67_RS12270 (JRU67_12270) ceuB 2399430..2400401 (-) 972 WP_275431249.1 ABC transporter permease Machinery gene
  JRU67_RS12275 (JRU67_12275) - 2400528..2400944 (-) 417 WP_025905416.1 FixH family protein -
  JRU67_RS12280 (JRU67_12280) nrdF 2401094..2402065 (-) 972 WP_025905415.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  JRU67_RS12285 (JRU67_12285) nrdE 2402094..2404199 (-) 2106 WP_025905414.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  JRU67_RS12290 (JRU67_12290) nrdI 2404162..2404560 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35503.01 Da        Isoelectric Point: 10.6234

>NTDB_id=534330 JRU67_RS12270 WP_275431249.1 2399430..2400401(-) (ceuB) [Mammaliicoccus sciuri strain GDQ20D70P]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPYTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=534330 JRU67_RS12270 WP_275431249.1 2399430..2400401(-) (ceuB) [Mammaliicoccus sciuri strain GDQ20D70P]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTTACATATATTAAATTTAACTGACGAACAGAAGAACATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATGCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCTTTAGTTGGTATCATGCTCGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
CTATATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTGTGAATTTAGGACTTAATTATCAAAAAGTTGTCAATATTGGACTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTGAAAAA
TGCATTGCCATATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATAGGAAGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATAGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.42

98.142

0.505