Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U722_RS18370 Genome accession   NC_023073
Coordinates   3805442..3806131 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3800442..3811131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS18350 (U722_19520) - 3801346..3801693 (-) 348 WP_004393256.1 YxeA family protein -
  U722_RS18355 (U722_19525) yxdM 3801707..3803575 (-) 1869 WP_024085998.1 ABC transporter permease YxdM -
  U722_RS18360 (U722_19530) yxdL 3803550..3804323 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  U722_RS18365 (U722_19535) yxdK 3804468..3805445 (-) 978 WP_014306127.1 two-component system sensor histidine kinase YxdK -
  U722_RS18370 (U722_19540) braR 3805442..3806131 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  U722_RS18375 (U722_19545) fba 3806239..3807111 (-) 873 WP_024085999.1 class II fructose-1,6-bisphosphate aldolase -
  U722_RS18380 (U722_19550) iolI 3807114..3807956 (-) 843 WP_015387483.1 2-keto-myo-inositol isomerase -
  U722_RS18385 (U722_19555) - 3808044..3808913 (-) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  U722_RS18390 (U722_19560) - 3808932..3809966 (-) 1035 WP_024086000.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=53431 U722_RS18370 WP_004393241.1 3805442..3806131(-) (braR) [Bacillus amyloliquefaciens LFB112]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=53431 U722_RS18370 WP_004393241.1 3805442..3806131(-) (braR) [Bacillus amyloliquefaciens LFB112]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment