Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   LB316_RS09245 Genome accession   NZ_CP084107
Coordinates   1905837..1906577 (-) Length   246 a.a.
NCBI ID   WP_029753552.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900837..1911577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS09220 (LB316_09215) hemH 1901714..1902637 (-) 924 WP_216805663.1 ferrochelatase -
  LB316_RS09225 (LB316_09220) hemE 1902695..1903732 (-) 1038 WP_000233531.1 uroporphyrinogen decarboxylase -
  LB316_RS09230 (LB316_09225) - 1903722..1903808 (-) 87 WP_031875110.1 hypothetical protein -
  LB316_RS09235 (LB316_09230) traP 1903994..1904497 (+) 504 WP_000737983.1 signal transduction protein TRAP -
  LB316_RS09240 (LB316_09235) - 1904621..1905844 (-) 1224 WP_029753554.1 ABC transporter permease -
  LB316_RS09245 (LB316_09240) pptA 1905837..1906577 (-) 741 WP_029753552.1 ABC transporter ATP-binding protein Regulator
  LB316_RS09250 (LB316_09245) - 1906711..1907133 (+) 423 WP_000004981.1 HIT family protein -
  LB316_RS09255 (LB316_09250) - 1907275..1907640 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  LB316_RS09260 (LB316_09255) - 1908374..1908931 (+) 558 WP_029753551.1 DUF3267 domain-containing protein -
  LB316_RS09265 (LB316_09260) - 1909135..1910097 (+) 963 WP_000782119.1 foldase protein PrsA -
  LB316_RS09270 (LB316_09265) yhaM 1910218..1911159 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27701.09 Da        Isoelectric Point: 4.7455

>NTDB_id=534306 LB316_RS09245 WP_029753552.1 1905837..1906577(-) (pptA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMKRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=534306 LB316_RS09245 WP_029753552.1 1905837..1906577(-) (pptA) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCATATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAAGCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCT
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACCGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545