Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JSR10_RS14100 Genome accession   NZ_CP069381
Coordinates   2853156..2853761 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica strain GSJ/2016-Sal-016     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2848156..2858761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSR10_RS14085 helD 2848373..2850427 (-) 2055 WP_000420517.1 DNA helicase IV -
  JSR10_RS14090 - 2850551..2850997 (+) 447 WP_001261222.1 YccF domain-containing protein -
  JSR10_RS14095 yccS 2851016..2853169 (+) 2154 WP_000950875.1 YccS family putative transporter -
  JSR10_RS14100 sxy/tfoX 2853156..2853761 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  JSR10_RS14105 sulA 2853978..2854487 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  JSR10_RS14110 ompA 2854844..2855896 (+) 1053 WP_001674965.1 porin OmpA -
  JSR10_RS14115 matP 2855968..2856420 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  JSR10_RS14120 - 2856606..2858366 (+) 1761 WP_000156454.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=534269 JSR10_RS14100 WP_001202375.1 2853156..2853761(-) (sxy/tfoX) [Salmonella enterica strain GSJ/2016-Sal-016]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=534269 JSR10_RS14100 WP_001202375.1 2853156..2853761(-) (sxy/tfoX) [Salmonella enterica strain GSJ/2016-Sal-016]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751