Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LB316_RS04040 Genome accession   NZ_CP084107
Coordinates   818119..819201 (+) Length   360 a.a.
NCBI ID   WP_000370986.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 813119..824201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS04020 (LB316_04020) - 813489..814559 (-) 1071 WP_000460983.1 GGDEF domain-containing protein -
  LB316_RS04025 (LB316_04025) - 814877..815932 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  LB316_RS04030 (LB316_04030) - 816104..816745 (-) 642 WP_000192956.1 YigZ family protein -
  LB316_RS04035 (LB316_04035) fakB1 816889..817755 (+) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  LB316_RS04040 (LB316_04040) comFA 818119..819201 (+) 1083 WP_000370986.1 DEAD/DEAH box helicase Machinery gene
  LB316_RS04045 (LB316_04045) - 819194..819868 (+) 675 WP_001057968.1 ComF family protein -
  LB316_RS04050 (LB316_04050) raiA 819929..820501 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  LB316_RS04055 (LB316_04055) secA 820915..823446 (+) 2532 WP_000506541.1 preprotein translocase subunit SecA -
  LB316_RS04060 (LB316_04060) - 823488..823586 (+) 99 WP_229375620.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42055.60 Da        Isoelectric Point: 9.8309

>NTDB_id=534252 LB316_RS04040 WP_000370986.1 818119..819201(+) (comFA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKHAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=534252 LB316_RS04040 WP_000370986.1 818119..819201(+) (comFA) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGCTCGCAAAGTTCATCGCAAGCATATTATCATCTCTCATTTGAATT
GTCAGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAACACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTTTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(214-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367