Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LCF29_RS23500 Genome accession   NZ_CP084096
Coordinates   4928029..4929054 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli O78 strain 3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4923029..4934054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF29_RS23485 (LCF29_23485) yiiX 4924591..4925199 (+) 609 WP_000877400.1 YiiX family permuted papain-like enzyme -
  LCF29_RS23490 (LCF29_23490) rpmE 4925260..4925472 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  LCF29_RS23495 (LCF29_23495) priA 4925675..4927873 (+) 2199 WP_023155166.1 primosomal protein N' Machinery gene
  LCF29_RS23500 (LCF29_23500) cytR 4928029..4929054 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  LCF29_RS23505 (LCF29_23505) ftsN 4929146..4930105 (+) 960 WP_000068837.1 cell division protein FtsN -
  LCF29_RS23510 (LCF29_23510) hslV 4930198..4930728 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  LCF29_RS23515 (LCF29_23515) hslU 4930738..4932069 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  LCF29_RS23520 (LCF29_23520) menA 4932136..4933062 (+) 927 WP_001308187.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  LCF29_RS23525 (LCF29_23525) rraA 4933155..4933640 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=534224 LCF29_RS23500 WP_000644904.1 4928029..4929054(+) (cytR) [Escherichia coli O78 strain 3]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=534224 LCF29_RS23500 WP_000644904.1 4928029..4929054(+) (cytR) [Escherichia coli O78 strain 3]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATAGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628