Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JN757_RS24290 Genome accession   NZ_CP069352
Coordinates   5549699..5551066 (-) Length   455 a.a.
NCBI ID   WP_095181861.1    Uniprot ID   -
Organism   Pseudomonas granadensis isolate CT364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5544699..5556066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN757_RS24265 (JN757_24255) - 5544813..5545523 (+) 711 WP_203419566.1 GntR family transcriptional regulator -
  JN757_RS24270 (JN757_24260) yjiA 5545646..5546617 (-) 972 WP_203419567.1 GTPase -
  JN757_RS24275 (JN757_24265) - 5546771..5546968 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  JN757_RS24280 (JN757_24270) - 5546984..5549050 (-) 2067 WP_203419568.1 carbon starvation CstA family protein -
  JN757_RS24285 (JN757_24275) - 5549212..5549580 (+) 369 WP_203419569.1 PilZ domain-containing protein -
  JN757_RS24290 (JN757_24280) radA 5549699..5551066 (-) 1368 WP_095181861.1 DNA repair protein RadA Machinery gene
  JN757_RS24295 (JN757_24285) - 5551112..5551657 (-) 546 WP_203419570.1 ankyrin repeat domain-containing protein -
  JN757_RS24300 (JN757_24290) katB 5551717..5553258 (-) 1542 WP_203419571.1 catalase KatB -
  JN757_RS24305 (JN757_24295) mscL 5553545..5553958 (+) 414 WP_203419572.1 large-conductance mechanosensitive channel protein MscL -
  JN757_RS24310 (JN757_24300) - 5554003..5554779 (-) 777 WP_203419573.1 ferredoxin--NADP reductase -
  JN757_RS24315 (JN757_24305) - 5555099..5555812 (+) 714 WP_203422142.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48747.21 Da        Isoelectric Point: 6.8987

>NTDB_id=534145 JN757_RS24290 WP_095181861.1 5549699..5551066(-) (radA) [Pseudomonas granadensis isolate CT364]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=534145 JN757_RS24290 WP_095181861.1 5549699..5551066(-) (radA) [Pseudomonas granadensis isolate CT364]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGCGGTGAATG
CGGCGCGTGGAACACGCTGACCGAAACCATGATAGAGAGCGGCGGCGCCACGGCACCCACCGGGCGCACCGGTTGGGCCG
GGCAACAAGCACAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAAATCCCGCGTTTTTCTACAGCGTCGGGTGAGCTC
GATCGCGTGCTTGGCGGCGGTCTGGTCGACGGTTCGGTGGTGCTCATCGGCGGTGATCCGGGCATCGGCAAGTCGACGAT
TCTGCTGCAAACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCACGCCGCCTCGGCTTGCCGCAAGATCAGTTGCGAGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACAATTTTCACCGAACAGCTGCAATCGGCACC
CGGCGGCGTTTCCCAGGTGCGCGAAAGTGCCGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGTACGGCGATTTTCCTCG
TCGGCCACGTTACCAAGGAAGGCGCATTGGCCGGTCCCCGTGTGCTCGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAGTCCGATGGGCGCCTGCGCTTGTTGCGCGCGGTGAAGAACCGTTTCGGCGCGGTCAATGAGTTGGGCGTGTTCGG
CATGACCGACAAGGGTTTGAAAGAAGTCTCCAACCCTTCGGCGATCTTTCTCACGCGCGCCCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACGCGGCCAATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGCCATCTGGCC
AATCCGCGCCGGGTGACGCTGGGTCTGGACCAGAACCGCTTGGCCATGCTGCTTGCGGTTCTGCACCGCCACGGTGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCTTCCGATCTGGCGCTGA
TGGCGGCTGTCATGTCGAGCTTGCGCAACCGGCCGTTGCCGCATGATCTGCTGGTGTTCGGCGAGGTCGGTCTGTCCGGT
GAAGTGCGCCCGGTGCCGAGCGGGCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGTTTCAAGCGCGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAGTCGCCGGCAGGCTTGCAGATCATTGCAGTCACCCGCCTCGAGCAGGCCCTCGACGCACTCT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464
  radA Streptococcus mitis SK321

46.272

100

0.464
  radA Streptococcus mitis NCTC 12261

46.053

100

0.462