Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C269_RS07225 Genome accession   NC_018631
Coordinates   1520269..1522056 (-) Length   595 a.a.
NCBI ID   WP_010015358.1    Uniprot ID   A0AB35FY78
Organism   Leuconostoc gelidum JB7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1515269..1527056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C269_RS07195 (C269_07235) - 1515379..1515762 (-) 384 WP_010015351.1 VOC family protein -
  C269_RS07200 (C269_07240) - 1515825..1516559 (-) 735 WP_010015353.1 hypothetical protein -
  C269_RS07205 (C269_07245) - 1516564..1517580 (-) 1017 WP_010015354.1 zinc-dependent alcohol dehydrogenase family protein -
  C269_RS07210 (C269_07250) - 1517774..1518742 (+) 969 WP_010015355.1 LacI family DNA-binding transcriptional regulator -
  C269_RS07215 (C269_07255) - 1518799..1519716 (-) 918 WP_010015356.1 NAD(P)-dependent oxidoreductase -
  C269_RS07220 (C269_07260) - 1519761..1520156 (-) 396 WP_029508482.1 cytidine deaminase -
  C269_RS07225 (C269_07265) pepF 1520269..1522056 (-) 1788 WP_010015358.1 oligoendopeptidase F Regulator
  C269_RS07230 (C269_07270) - 1522154..1523182 (-) 1029 WP_010015359.1 competence protein CoiA -
  C269_RS07235 (C269_07275) - 1523232..1524665 (-) 1434 WP_010015360.1 ABC transporter substrate-binding protein/permease -
  C269_RS07240 (C269_07280) - 1524761..1525513 (-) 753 WP_014947680.1 amino acid ABC transporter ATP-binding protein -
  C269_RS07245 (C269_07285) - 1525513..1526961 (-) 1449 WP_010015363.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67629.44 Da        Isoelectric Point: 4.5373

>NTDB_id=53413 C269_RS07225 WP_010015358.1 1520269..1522056(-) (pepF) [Leuconostoc gelidum JB7]
MAQLLRNEVPEDLTWDLSTIFDSDSDWELAFAAVKQETEMLSRFVGHVGDSAELLQSALEADLKIERELEKVYVYAHQIY
DQDTTNQSYAAFNSRVQALWAEVSQATAYFQPEVLNIPDDKLAVYLMTDGLKQYAHLFETLRALKPHTLAAEQEKLLAGV
GDIFNASENTFGALDNSDITFGDVHTESGETVALTNGLYSLLLESKSRDLRREAFETLYDSYIGLQNTFASTLSSHIKGH
NFLAKVRHYNSAREAAILPHNVPTTVFDTLSQTVAANLPLLHRFVSLRKRILGVTDVHSYDLYVPLVDEVDFDVTYEKAQ
EIVLAALAPLGQDYLDIVKKAFDERWIDVVENKGKRSGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRH
NQDYHYGDYPIFLAEIASTTNESLLTDYLLKTNSDPKFQAYVLNQYLDGFKGTVFRQTQFAEFENWIHEQSAAGVALTAD
HMSTYYSELNQKYYGPDLFPDEEIAYEWTRIPHFYYNYYVYQYATGEAAATTLAERIIKNDGAEDYKAYLKAGSSDYPLN
VILKAGVDMSQADYLKQAFNVFETRLNQLESLLIK

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=53413 C269_RS07225 WP_010015358.1 1520269..1522056(-) (pepF) [Leuconostoc gelidum JB7]
ATGGCACAACTATTACGCAATGAAGTACCTGAAGATCTTACGTGGGATCTGTCTACAATTTTTGATTCTGATAGTGACTG
GGAACTCGCTTTTGCTGCTGTTAAACAGGAAACGGAAATGTTGAGTCGTTTTGTTGGACATGTTGGCGATTCAGCTGAAT
TGTTACAATCTGCATTAGAGGCTGATTTGAAAATAGAACGGGAATTGGAAAAAGTGTATGTATATGCACATCAAATTTAT
GATCAAGACACAACAAATCAATCGTATGCGGCTTTCAATTCACGCGTACAAGCACTTTGGGCTGAAGTAAGTCAGGCAAC
AGCCTATTTCCAACCCGAAGTTTTAAACATACCGGATGATAAATTGGCAGTTTATTTAATGACTGATGGCTTAAAACAGT
ATGCACATTTATTTGAAACATTACGTGCTTTAAAGCCACACACGTTAGCTGCGGAACAAGAAAAATTATTAGCTGGTGTG
GGTGATATTTTTAATGCATCAGAAAACACGTTTGGTGCACTTGATAATTCAGATATAACTTTTGGGGATGTGCATACGGA
ATCAGGCGAGACTGTAGCGTTGACTAATGGCCTATATAGCTTGCTACTTGAATCAAAGTCACGGGATTTGCGCCGCGAAG
CATTTGAAACATTGTATGACAGTTACATCGGGTTGCAAAATACATTTGCTTCAACTTTGTCATCTCATATTAAAGGACAT
AACTTTTTAGCTAAAGTGCGTCATTATAATTCAGCACGCGAAGCTGCTATCTTACCACACAACGTCCCAACAACTGTTTT
TGATACGTTAAGTCAAACGGTAGCGGCTAATTTACCGTTGTTACATCGCTTTGTATCATTACGTAAAAGAATCTTAGGCG
TAACAGATGTGCATAGTTATGATTTGTATGTGCCATTGGTGGATGAAGTTGATTTTGACGTCACATATGAAAAGGCGCAA
GAAATTGTGTTAGCTGCTTTAGCACCATTAGGCCAAGATTATCTTGATATTGTCAAAAAAGCATTTGATGAACGCTGGAT
TGATGTTGTTGAAAATAAAGGGAAACGCTCAGGAGCATACTCGAGTGGGACTTATGATACAAATCCTTTTATTTTGTTAA
ACTGGCAAAATAATTTGAATAATGTTTATACGCTGGCTCATGAAATGGGTCATTCTGTTCATTCTTATTTAACACGACAT
AACCAGGATTATCATTATGGTGACTATCCGATTTTCTTAGCAGAAATTGCTTCGACAACTAATGAAAGTTTACTAACAGA
TTATTTACTAAAAACAAATAGTGACCCTAAATTTCAAGCATATGTTTTAAATCAATATCTTGATGGCTTTAAAGGAACTG
TCTTTCGTCAGACGCAGTTTGCGGAATTTGAAAATTGGATTCATGAGCAAAGTGCAGCGGGTGTCGCTTTGACTGCTGAC
CACATGAGCACCTATTATAGTGAACTTAACCAAAAATATTATGGACCAGATTTGTTTCCGGATGAAGAAATTGCGTATGA
ATGGACACGAATACCACATTTTTATTATAACTACTATGTTTATCAGTACGCAACGGGTGAAGCGGCAGCGACAACATTAG
CAGAACGCATCATTAAAAATGATGGCGCAGAAGATTATAAAGCGTACTTAAAAGCCGGTTCATCGGACTACCCTTTGAAC
GTGATTTTAAAAGCTGGTGTGGATATGAGTCAAGCTGATTATTTAAAGCAGGCATTCAATGTGTTTGAAACACGATTAAA
TCAATTAGAATCATTATTAATCAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.614

99.664

0.524

Multiple sequence alignment