Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JRC48_RS10505 Genome accession   NZ_CP069349
Coordinates   2197260..2198648 (+) Length   462 a.a.
NCBI ID   WP_068759265.1    Uniprot ID   A0A0X1TKM2
Organism   Turicibacter sp. TJ11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192260..2203648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC48_RS10485 - 2194162..2194491 (+) 330 WP_235069471.1 hypothetical protein -
  JRC48_RS10490 - 2194648..2195169 (+) 522 WP_235069472.1 RNA polymerase sigma factor -
  JRC48_RS10495 - 2195174..2195728 (+) 555 WP_235069473.1 hypothetical protein -
  JRC48_RS10500 hflX 2195762..2197027 (-) 1266 WP_235069474.1 GTPase HflX -
  JRC48_RS10505 radA 2197260..2198648 (+) 1389 WP_068759265.1 DNA repair protein RadA Machinery gene
  JRC48_RS10510 - 2198681..2199514 (+) 834 WP_235069475.1 DUF4349 domain-containing protein -
  JRC48_RS10515 - 2199529..2200548 (+) 1020 WP_235069476.1 YobA family protein -
  JRC48_RS10520 - 2200684..2202264 (+) 1581 WP_235069477.1 IS1182 family transposase -
  JRC48_RS10525 - 2202282..2203502 (-) 1221 WP_055275513.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50945.81 Da        Isoelectric Point: 7.9828

>NTDB_id=534099 JRC48_RS10505 WP_068759265.1 2197260..2198648(+) (radA) [Turicibacter sp. TJ11]
MAKARTKTSFFCQQCGTESLKWVGRCPGCGEWNTMVEELKPTKAEQRRGFVASESMAKPQRLQEIETKEEARIQTSMSEL
NRVLGGGIVRGSLVLCGGEPGIGKSTLLLQTAQDLAHKNVQVLYVSGEESARQIKLRAERLGVSSEHLYIYAETDLTLIE
RQIQQLKPEFVIIDSIQTIHMPEVTSAPGSVSQVRECTAQLMKIAKIGGISVFIVGHVTKDGNIAGPRLLEHMVDTVLYF
EGDRHHTYRILRAVKNRFGSTNEIGIFDMKEEGLDEVTNASEVFLEDRTKGLPGTAIMASIEGTRPILVEIQSLLTPTSF
GNPKRMASGVDHNRVSLILAVLEKRMGFFLQNQDTYVKVTGGVKLDEPAVDLAIVASIVSSYKDKMTPSGDVYMGEVGLT
GEIRRVSRIEERVKEAKKLGFTRAIIPKKNIGGWTAPKGMEIVGVDTISDALKAMFKDDLKF

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=534099 JRC48_RS10505 WP_068759265.1 2197260..2198648(+) (radA) [Turicibacter sp. TJ11]
ATGGCGAAAGCAAGAACAAAAACATCATTTTTCTGTCAGCAATGTGGGACAGAAAGTTTAAAATGGGTCGGAAGATGTCC
AGGTTGTGGCGAATGGAATACGATGGTGGAGGAATTAAAGCCCACAAAGGCAGAACAGCGCCGTGGCTTTGTAGCAAGTG
AAAGTATGGCAAAACCTCAACGTCTACAAGAGATAGAAACAAAAGAGGAAGCACGTATTCAGACATCAATGAGTGAGCTT
AACCGTGTTCTTGGTGGTGGAATTGTTCGTGGATCACTTGTTCTGTGTGGGGGTGAGCCTGGGATTGGGAAATCAACACT
ACTTTTACAAACGGCACAAGATTTAGCGCATAAAAATGTTCAAGTATTATATGTTTCAGGAGAAGAATCTGCTCGTCAAA
TTAAACTTCGTGCTGAGCGTTTAGGAGTAAGTAGTGAGCACTTATATATTTACGCAGAAACAGATTTAACTTTAATTGAA
CGTCAAATTCAACAGTTAAAACCAGAGTTTGTCATTATCGACTCGATTCAGACGATTCATATGCCAGAGGTAACATCGGC
ACCTGGGAGTGTCTCGCAAGTTCGTGAATGTACGGCCCAATTGATGAAAATTGCTAAAATTGGTGGAATTTCAGTCTTTA
TTGTCGGACATGTGACGAAAGATGGAAATATCGCTGGGCCACGTTTACTCGAGCATATGGTGGATACTGTCTTATATTTT
GAAGGAGATCGTCATCATACGTATCGTATTTTACGAGCAGTTAAAAACCGATTTGGGTCAACGAATGAGATTGGAATCTT
TGATATGAAAGAAGAGGGGCTTGATGAAGTGACGAATGCTTCAGAGGTCTTCTTAGAAGATCGCACGAAAGGATTACCAG
GAACGGCGATTATGGCCTCAATTGAAGGAACACGTCCAATCTTAGTTGAGATTCAATCATTATTAACGCCGACTTCATTT
GGAAATCCAAAACGAATGGCATCTGGAGTGGATCATAATCGTGTGTCTTTAATTTTAGCCGTGCTTGAAAAACGTATGGG
ATTCTTCTTACAAAATCAAGATACATATGTGAAAGTAACTGGTGGTGTAAAGTTAGATGAACCGGCTGTCGATTTAGCAA
TTGTGGCAAGTATTGTTTCAAGTTATAAAGATAAAATGACGCCAAGTGGCGATGTATATATGGGAGAGGTTGGATTAACC
GGTGAAATTCGACGTGTCTCTCGTATCGAAGAGCGTGTCAAAGAAGCGAAAAAACTTGGGTTTACGCGCGCAATTATTCC
AAAGAAAAATATAGGTGGATGGACAGCTCCAAAAGGAATGGAGATTGTTGGGGTTGATACCATTTCGGATGCACTTAAAG
CAATGTTTAAAGATGATTTGAAGTTCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-222)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X1TKM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.265

97.835

0.639
  radA Streptococcus mitis NCTC 12261

58.72

98.052

0.576
  radA Streptococcus pneumoniae Rx1

58.72

98.052

0.576
  radA Streptococcus pneumoniae D39

58.72

98.052

0.576
  radA Streptococcus pneumoniae R6

58.72

98.052

0.576
  radA Streptococcus pneumoniae TIGR4

58.72

98.052

0.576
  radA Streptococcus mitis SK321

58.499

98.052

0.574