Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JRC48_RS09165 Genome accession   NZ_CP069349
Coordinates   1906320..1907276 (-) Length   318 a.a.
NCBI ID   WP_235069269.1    Uniprot ID   -
Organism   Turicibacter sp. TJ11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901320..1912276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC48_RS09145 - 1901447..1903102 (-) 1656 WP_235069265.1 hypothetical protein -
  JRC48_RS09150 - 1903620..1904594 (-) 975 WP_235069266.1 siderophore ABC transporter substrate-binding protein -
  JRC48_RS09155 - 1904631..1905386 (-) 756 WP_235069267.1 ABC transporter ATP-binding protein -
  JRC48_RS09160 - 1905383..1906333 (-) 951 WP_235069268.1 iron chelate uptake ABC transporter family permease subunit -
  JRC48_RS09165 ceuB 1906320..1907276 (-) 957 WP_235069269.1 ABC transporter permease Machinery gene
  JRC48_RS09170 - 1907469..1907840 (+) 372 WP_235069270.1 AraC family transcriptional regulator -
  JRC48_RS09175 - 1907868..1909151 (-) 1284 WP_235069271.1 alkaline phosphatase family protein -
  JRC48_RS09180 - 1909312..1909488 (+) 177 WP_235069272.1 hypothetical protein -
  JRC48_RS09185 - 1909529..1909831 (-) 303 WP_235069273.1 CAAX protease family protein -
  JRC48_RS09190 hslO 1909845..1910717 (-) 873 WP_235069274.1 Hsp33 family molecular chaperone HslO -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34697.91 Da        Isoelectric Point: 9.3396

>NTDB_id=534097 JRC48_RS09165 WP_235069269.1 1906320..1907276(-) (ceuB) [Turicibacter sp. TJ11]
MKKRYLIVVLILLGIISIFIGASEVTLSAILSGDRQQLYILLISRIPRLLSVCVTGIGMSICGLIMQQLTRNKFVSPTTA
ATMDFAKLGMLIAMVFFTGAGLIHKMIFAFACSLLGTFLFMGIMKQVKFQNSIFIPLIGMMLGNVVNSVTSFIAYQFDLV
QNISSWAEGDFTNVMKGNFELIYLSIPLVVIAFLYANKFTIAGMGEDFSTNLGLNHQLIVNIGLTIVALITSVIIITIGS
IPFIGLIVPNIVSMYLGDNLKQSLGHTALMGAIFLLVCDIVGRLVIYPYEVTIGLTVGVIGSLIFLFMMMRRNSNATS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=534097 JRC48_RS09165 WP_235069269.1 1906320..1907276(-) (ceuB) [Turicibacter sp. TJ11]
TTGAAAAAAAGATATCTAATCGTAGTTTTAATTTTACTAGGAATTATATCTATTTTTATTGGAGCGAGTGAAGTAACTCT
ATCTGCTATTTTAAGTGGGGATCGTCAGCAATTATATATTTTATTAATTAGTCGTATTCCCCGTTTATTGAGTGTTTGCG
TTACAGGAATAGGGATGAGTATTTGTGGATTGATTATGCAGCAACTAACAAGAAATAAGTTTGTATCCCCTACAACAGCA
GCCACGATGGACTTTGCAAAACTCGGGATGCTCATTGCAATGGTCTTTTTTACCGGAGCGGGATTAATCCATAAAATGAT
TTTTGCTTTTGCATGTTCACTACTTGGAACGTTTTTGTTTATGGGAATTATGAAGCAAGTTAAATTTCAAAATTCTATAT
TTATTCCTTTAATCGGAATGATGCTTGGAAATGTTGTTAATTCGGTGACTAGTTTTATTGCTTATCAATTTGATCTCGTT
CAAAATATTTCATCTTGGGCAGAAGGAGATTTTACGAATGTCATGAAAGGGAATTTTGAGTTAATTTACTTAAGTATTCC
ACTTGTTGTAATCGCCTTCTTATATGCCAATAAATTTACTATTGCAGGAATGGGAGAAGACTTTTCGACGAATCTTGGAT
TAAATCATCAATTAATTGTGAACATTGGACTAACAATTGTTGCATTGATTACATCCGTTATCATTATTACGATTGGCTCA
ATTCCATTCATTGGACTAATTGTTCCTAATATTGTATCGATGTATTTAGGAGATAATTTAAAACAGAGTTTAGGACATAC
CGCTTTAATGGGTGCTATTTTCTTATTAGTTTGTGATATAGTTGGCCGCCTAGTCATTTATCCATATGAAGTAACCATTG
GGTTAACAGTAGGAGTTATAGGAAGTCTTATTTTCTTATTTATGATGATGAGGAGGAATTCGAATGCGACGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.16

98.428

0.494