Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQX13_RS25300 Genome accession   NZ_CP069338
Coordinates   5892656..5894017 (-) Length   453 a.a.
NCBI ID   WP_203411470.1    Uniprot ID   -
Organism   Archangium violaceum strain SDU34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5887656..5899017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQX13_RS25285 (JQX13_25295) - 5889146..5890618 (-) 1473 WP_203411467.1 ATP-binding protein -
  JQX13_RS25290 (JQX13_25300) - 5891028..5891816 (+) 789 WP_203411468.1 hypothetical protein -
  JQX13_RS25295 (JQX13_25305) - 5891843..5892646 (+) 804 WP_203411469.1 hypothetical protein -
  JQX13_RS25300 (JQX13_25310) radA 5892656..5894017 (-) 1362 WP_203411470.1 DNA repair protein RadA Machinery gene
  JQX13_RS25305 (JQX13_25315) - 5894222..5894491 (+) 270 WP_203411471.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  JQX13_RS25310 (JQX13_25320) bioB 5894655..5895686 (+) 1032 WP_203411472.1 biotin synthase BioB -
  JQX13_RS25315 (JQX13_25325) bioF 5895687..5896892 (+) 1206 WP_203411473.1 8-amino-7-oxononanoate synthase -
  JQX13_RS25320 (JQX13_25330) bioD 5896913..5897647 (+) 735 WP_203411474.1 dethiobiotin synthase -
  JQX13_RS25325 (JQX13_25335) - 5897753..5898031 (+) 279 WP_203411475.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48237.52 Da        Isoelectric Point: 6.8241

>NTDB_id=534069 JQX13_RS25300 WP_203411470.1 5892656..5894017(-) (radA) [Archangium violaceum strain SDU34]
MAKAKTHYTCQACGYQSAKWLGKCPDCGAWSSLVEETEAKVDDKRPAWGASGGASKPVRLREVSGEQEERRRTGIAEFDR
VLGGGVVDGSLVLLGGDPGIGKSTLLLAALDRLGRWGPVLYVSGEESLRQTKMRAERLRVESEAIHLFAETDADRVLAVA
EGLKPRALVVDSIQTMYLPELGSAPGSISQVREVAGRFMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLMEVPDPSALFLAERPAGKAGSVVTCTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEDIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPMEAHTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRAIIPKGSARRLEDTKLEVVGVETLSEALGAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=534069 JQX13_RS25300 WP_203411470.1 5892656..5894017(-) (radA) [Archangium violaceum strain SDU34]
ATGGCGAAGGCGAAGACGCACTACACGTGTCAGGCGTGCGGGTACCAGTCGGCGAAGTGGTTGGGGAAGTGCCCCGACTG
CGGCGCGTGGAGCTCGCTGGTGGAGGAGACCGAGGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGGGCCTCGGGAGGGG
CGTCCAAGCCGGTGCGGCTGCGCGAGGTGAGCGGCGAGCAGGAGGAGCGCCGGCGCACGGGCATCGCCGAGTTCGACCGG
GTGCTCGGAGGTGGAGTGGTGGACGGCTCGCTGGTTCTGCTGGGAGGAGACCCGGGCATCGGCAAGTCCACGCTGCTGCT
GGCGGCGCTGGACAGGCTGGGGCGCTGGGGCCCGGTGCTCTACGTATCGGGCGAGGAGTCGCTGCGGCAGACGAAGATGC
GGGCCGAGCGGCTGCGGGTGGAGAGCGAGGCCATCCACCTCTTCGCGGAGACGGACGCGGACCGGGTGCTGGCGGTGGCC
GAGGGCCTCAAGCCCCGGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAGCGCGCCGGGGAG
CATCTCGCAGGTGCGCGAGGTGGCGGGGCGCTTCATGGCCTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGGC
ACGTGACGAAGGAGGGCTCCATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCCTTCCGGATCCTCCGGGCGCACAAGAACCGCTTCGGCTCGACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGATGGAGGTGCCGGACCCTTCCGCGCTCTTCCTGGCGGAGCGGCCGGCGGGCAAGGCGGGCAGCGTGG
TGACGTGCACGCTGAACGGCACGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
AGGCGCACGGCCATTGGCGTGGATGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGACATCCCACT
GGTGGGGTGCGACCTCTTCGTGAACGTGGCGGGAGGCATGCAGCTGTCCGAGCCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGATGGAGGCGCACACGCTGGTGCTGGGCGAGGTGGGCCTGGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCACGGCTCGCCGAGGCGGCGAAGATGGGCTTCCAGCGGGCCATCATCCCGAAGGGGAG
CGCGCGGCGGCTGGAGGACACGAAGCTGGAAGTGGTGGGAGTCGAGACGCTCTCCGAGGCGCTGGGAGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.204

99.779

0.541
  radA Streptococcus pneumoniae Rx1

53.084

100

0.532
  radA Streptococcus pneumoniae D39

53.084

100

0.532
  radA Streptococcus pneumoniae R6

53.084

100

0.532
  radA Streptococcus pneumoniae TIGR4

53.084

100

0.532
  radA Streptococcus mitis NCTC 12261

52.539

100

0.525
  radA Streptococcus mitis SK321

52.539

100

0.525