Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   U722_RS13845 Genome accession   NC_023073
Coordinates   2930431..2931126 (-) Length   231 a.a.
NCBI ID   WP_014305616.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2925431..2936126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS13825 (U722_14750) - 2925822..2926532 (-) 711 WP_015387829.1 TIGR02206 family membrane protein -
  U722_RS13830 (U722_14755) - 2926639..2928579 (-) 1941 WP_003152291.1 FtsX-like permease family protein -
  U722_RS13835 (U722_14760) - 2928576..2929331 (-) 756 WP_015387828.1 ABC transporter ATP-binding protein -
  U722_RS13840 (U722_14765) - 2929434..2930438 (-) 1005 WP_024085706.1 sensor histidine kinase -
  U722_RS13845 (U722_14770) braR 2930431..2931126 (-) 696 WP_014305616.1 response regulator transcription factor Regulator
  U722_RS13850 (U722_14775) - 2931190..2932500 (-) 1311 WP_003152283.1 ABC transporter permease -
  U722_RS13855 (U722_14780) - 2932490..2933185 (-) 696 WP_003152281.1 ABC transporter ATP-binding protein -
  U722_RS13860 (U722_14785) - 2933201..2934184 (-) 984 WP_024085707.1 hypothetical protein -
  U722_RS13865 (U722_14790) - 2934221..2935207 (-) 987 WP_024085708.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26853.11 Da        Isoelectric Point: 7.1196

>NTDB_id=53406 U722_RS13845 WP_014305616.1 2930431..2931126(-) (braR) [Bacillus amyloliquefaciens LFB112]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFTEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=53406 U722_RS13845 WP_014305616.1 2930431..2931126(-) (braR) [Bacillus amyloliquefaciens LFB112]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAGGAGAGATTAACAGGCTGGTCATTTGC
GGTGCACGGAATAAAGGATTTCAGCCGGGTCATCCGGGAGTTTACTGAAATTAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCACCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAACTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAGGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385

Multiple sequence alignment