Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H8R33_RS07460 Genome accession   NZ_CP084080
Coordinates   1410719..1411585 (+) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405719..1416585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS07435 (H8R33_001246) - 1406154..1407413 (-) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -
  H8R33_RS07440 (H8R33_001247) - 1407413..1407970 (-) 558 WP_002852823.1 DedA family protein -
  H8R33_RS07445 (H8R33_001248) rny 1407979..1409532 (-) 1554 WP_002869639.1 ribonuclease Y -
  H8R33_RS07450 - 1409453..1410079 (-) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  H8R33_RS07455 (H8R33_001249) - 1410162..1410719 (+) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  H8R33_RS07460 (H8R33_001250) pilA 1410719..1411585 (+) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  H8R33_RS07465 (H8R33_001251) radA 1411585..1412925 (+) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  H8R33_RS07470 (H8R33_001252) atpB 1412994..1413674 (+) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  H8R33_RS07475 - 1413671..1413862 (+) 192 WP_002852856.1 membrane protein -
  H8R33_RS07480 metF 1413884..1414733 (-) 850 Protein_1448 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=534006 H8R33_RS07460 WP_002858085.1 1410719..1411585(+) (pilA) [Campylobacter jejuni strain MS2005]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=534006 H8R33_RS07460 WP_002858085.1 1410719..1411585(+) (pilA) [Campylobacter jejuni strain MS2005]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437