Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   H8R33_RS01440 Genome accession   NZ_CP084080
Coordinates   273842..274225 (-) Length   127 a.a.
NCBI ID   WP_042635825.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 268842..279225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS01415 aspS 269407..271158 (+) 1752 WP_002870092.1 aspartate--tRNA ligase -
  H8R33_RS01420 (H8R33_000223) adk 271155..271733 (+) 579 WP_002855137.1 adenylate kinase -
  H8R33_RS01425 (H8R33_000224) ppa 271743..272261 (+) 519 WP_002870091.1 inorganic diphosphatase -
  H8R33_RS01430 (H8R33_000225) msrA 272302..272799 (+) 498 WP_042635826.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H8R33_RS01435 - 272974..273813 (-) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  H8R33_RS01440 (H8R33_000226) dprB 273842..274225 (-) 384 WP_042635825.1 Holliday junction resolvase RuvX Machinery gene
  H8R33_RS01445 (H8R33_000227) dprA 274222..274995 (-) 774 WP_002870087.1 DNA-processing protein DprA Machinery gene
  H8R33_RS01450 - 274985..276067 (-) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  H8R33_RS01455 (H8R33_000228) ilvC 276071..277093 (-) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  H8R33_RS01460 - 277212..279146 (+) 1935 WP_002870085.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14174.69 Da        Isoelectric Point: 9.0848

>NTDB_id=533976 H8R33_RS01440 WP_042635825.1 273842..274225(-) (dprB) [Campylobacter jejuni strain MS2005]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=533976 H8R33_RS01440 WP_042635825.1 273842..274225(-) (dprB) [Campylobacter jejuni strain MS2005]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGTATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGACTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457