Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LCR13_RS05715 Genome accession   NZ_CP084055
Coordinates   1116467..1117891 (+) Length   474 a.a.
NCBI ID   WP_000132558.1    Uniprot ID   -
Organism   Escherichia coli strain X14-3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111467..1122891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCR13_RS05665 (LCR13_05675) - 1112054..1112350 (+) 297 WP_254825481.1 phage anti-RecBCD protein -
  LCR13_RS05670 (LCR13_05680) - 1112361..1112528 (+) 168 WP_151303945.1 DUF2737 family protein -
  LCR13_RS05675 (LCR13_05685) - 1112525..1112824 (+) 300 WP_096320732.1 hypothetical protein -
  LCR13_RS05680 (LCR13_05690) - 1112826..1113359 (+) 534 WP_247191508.1 ead/Ea22-like family protein -
  LCR13_RS05685 (LCR13_05695) - 1113356..1113658 (+) 303 WP_071528459.1 Lar family restriction alleviation protein -
  LCR13_RS05690 (LCR13_05700) - 1113651..1113932 (+) 282 WP_000002117.1 ASCH domain-containing protein -
  LCR13_RS05695 (LCR13_05705) - 1114318..1114485 (+) 168 WP_077150816.1 hypothetical protein -
  LCR13_RS05700 (LCR13_05710) - 1114513..1114857 (+) 345 WP_021529401.1 hypothetical protein -
  LCR13_RS05705 (LCR13_05715) - 1114935..1115126 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  LCR13_RS05710 (LCR13_05720) - 1115107..1116285 (-) 1179 WP_025404398.1 site-specific integrase -
  LCR13_RS05715 (LCR13_05725) sbcB 1116467..1117891 (+) 1425 WP_000132558.1 exodeoxyribonuclease I Machinery gene
  LCR13_RS05720 (LCR13_05730) tsuB 1117934..1118161 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LCR13_RS05725 (LCR13_05735) tsuA 1118175..1119232 (-) 1058 Protein_1126 thiosulfate utilization transporter TsuA/YeeE -
  LCR13_RS05730 (LCR13_05740) plaP 1119411..1120769 (-) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  LCR13_RS05735 (LCR13_05745) yoeI 1120759..1120821 (-) 63 WP_010723108.1 membrane protein YoeI -
  LCR13_RS05740 (LCR13_05750) yeeY 1121036..1121965 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LCR13_RS05745 (LCR13_05755) yeeZ 1122011..1122835 (-) 825 WP_000754725.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54355.59 Da        Isoelectric Point: 5.3476

>NTDB_id=533907 LCR13_RS05715 WP_000132558.1 1116467..1117891(+) (sbcB) [Escherichia coli strain X14-3]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=533907 LCR13_RS05715 WP_000132558.1 1116467..1117891(+) (sbcB) [Escherichia coli strain X14-3]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586