Detailed information NTG0053377

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: HMPREF1038_RS10045
• Genome accession: NC_018630
• Coordinates: 1861879..1862283 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588020.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae gamPNI0373
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1856879..1867283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF1038_RS10005 (HMPREF1038_02037)	rnpA	1857293..1857664 (-)	372	WP_000739246.1	ribonuclease P protein component	-
HMPREF1038_RS13455 (HMPREF1038_02038)	-	1857681..1857812 (-)	132	WP_000768904.1	hypothetical protein	-
HMPREF1038_RS10010 (HMPREF1038_02039)	-	1857813..1859003 (-)	1191	WP_000167766.1	acetate kinase	-
HMPREF1038_RS10015 (HMPREF1038_02040)	comYH	1859054..1860007 (-)	954	WP_000345116.1	class I SAM-dependent methyltransferase	Machinery gene
HMPREF1038_RS12125	-	1860068..1860662 (-)	595	Protein_1886	class I SAM-dependent methyltransferase	-
HMPREF1038_RS10030 (HMPREF1038_02044)	comGG/cglG	1860799..1861212 (-)	414	WP_000265631.1	competence type IV pilus minor pilin ComGG	Machinery gene
HMPREF1038_RS10035 (HMPREF1038_02045)	comGF/cglF	1861190..1861651 (-)	462	WP_000250531.1	competence type IV pilus minor pilin ComGF	Machinery gene
HMPREF1038_RS10040 (HMPREF1038_02046)	comGE/cglE	1861614..1861916 (-)	303	WP_000413382.1	competence type IV pilus minor pilin ComGE	Machinery gene
HMPREF1038_RS10045 (HMPREF1038_02047)	comGD/cglD	1861879..1862283 (-)	405	WP_000588020.1	competence type IV pilus minor pilin ComGD	Machinery gene
HMPREF1038_RS10050 (HMPREF1038_02048)	comGC/cglC	1862276..1862602 (-)	327	WP_000738633.1	comG operon protein ComGC	Machinery gene
HMPREF1038_RS10055 (HMPREF1038_02049)	comGB/cglB	1862604..1863620 (-)	1017	WP_001844679.1	competence type IV pilus assembly protein ComGB	Machinery gene
HMPREF1038_RS10060 (HMPREF1038_02050)	comGA/cglA/cilD	1863568..1864509 (-)	942	WP_001844680.1	competence type IV pilus ATPase ComGA	Machinery gene
HMPREF1038_RS10065 (HMPREF1038_02051)	-	1864585..1864950 (-)	366	WP_000286415.1	DUF1033 family protein	-
HMPREF1038_RS10070 (HMPREF1038_02052)	-	1865101..1866159 (-)	1059	WP_000649471.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14662.89 Da
• Isoelectric Point: 10.2164

>NTDB_id=53377 HMPREF1038_RS10045 WP_000588020.1 1861879..1862283(-) (comGD/cglD) [Streptococcus pneumoniae gamPNI0373]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTISNGSQKLPV
PKGIQVPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=53377 HMPREF1038_RS10045 WP_000588020.1 1861879..1862283(-) (comGD/cglD) [Streptococcus pneumoniae gamPNI0373]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAATTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGATTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGTCCCATCAGGCCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae Rx1	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae D39	97.015	100	0.97
comGD/cglD	Streptococcus pneumoniae R6	97.015	100	0.97
comGD/cglD	Streptococcus mitis SK321	96.269	100	0.963
comGD/cglD	Streptococcus mitis NCTC 12261	96.992	99.254	0.963
comYD	Streptococcus gordonii str. Challis substr. CH1	59.055	94.776	0.56
comYD	Streptococcus mutans UA140	50	95.522	0.478
comYD	Streptococcus mutans UA159	50	95.522	0.478