Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   HMPREF1038_RS10015 Genome accession   NC_018630
Coordinates   1859054..1860007 (-) Length   317 a.a.
NCBI ID   WP_000345116.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854054..1865007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS09990 (HMPREF1038_02034) - 1854815..1855438 (-) 624 WP_000932635.1 hypothetical protein -
  HMPREF1038_RS09995 (HMPREF1038_02035) jag 1855489..1856475 (-) 987 WP_000260015.1 RNA-binding cell elongation regulator Jag/EloR -
  HMPREF1038_RS10000 (HMPREF1038_02036) - 1856494..1857318 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  HMPREF1038_RS10005 (HMPREF1038_02037) rnpA 1857293..1857664 (-) 372 WP_000739246.1 ribonuclease P protein component -
  HMPREF1038_RS13455 (HMPREF1038_02038) - 1857681..1857812 (-) 132 WP_000768904.1 hypothetical protein -
  HMPREF1038_RS10010 (HMPREF1038_02039) - 1857813..1859003 (-) 1191 WP_000167766.1 acetate kinase -
  HMPREF1038_RS10015 (HMPREF1038_02040) comYH 1859054..1860007 (-) 954 WP_000345116.1 class I SAM-dependent methyltransferase Machinery gene
  HMPREF1038_RS12125 - 1860068..1860662 (-) 595 Protein_1886 class I SAM-dependent methyltransferase -
  HMPREF1038_RS10030 (HMPREF1038_02044) comGG/cglG 1860799..1861212 (-) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  HMPREF1038_RS10035 (HMPREF1038_02045) comGF/cglF 1861190..1861651 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  HMPREF1038_RS10040 (HMPREF1038_02046) comGE/cglE 1861614..1861916 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  HMPREF1038_RS10045 (HMPREF1038_02047) comGD/cglD 1861879..1862283 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  HMPREF1038_RS10050 (HMPREF1038_02048) comGC/cglC 1862276..1862602 (-) 327 WP_000738633.1 comG operon protein ComGC Machinery gene
  HMPREF1038_RS10055 (HMPREF1038_02049) comGB/cglB 1862604..1863620 (-) 1017 WP_001844679.1 competence type IV pilus assembly protein ComGB Machinery gene
  HMPREF1038_RS10060 (HMPREF1038_02050) comGA/cglA/cilD 1863568..1864509 (-) 942 WP_001844680.1 competence type IV pilus ATPase ComGA Machinery gene
  HMPREF1038_RS10065 (HMPREF1038_02051) - 1864585..1864950 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35623.84 Da        Isoelectric Point: 4.3256

>NTDB_id=53373 HMPREF1038_RS10015 WP_000345116.1 1859054..1860007(-) (comYH) [Streptococcus pneumoniae gamPNI0373]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELNQVKDNNQALKHLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=53373 HMPREF1038_RS10015 WP_000345116.1 1859054..1860007(-) (comYH) [Streptococcus pneumoniae gamPNI0373]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAAACTGAGCTAAACCAGGTCAAAGACAACAATC
AGGCCCTTAAGCATTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment