Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   U722_RS10815 Genome accession   NC_023073
Coordinates   2290300..2291790 (-) Length   496 a.a.
NCBI ID   WP_014305324.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2285300..2296790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS10785 (U722_11520) gudB 2285377..2286651 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  U722_RS10790 (U722_11525) - 2286812..2287396 (-) 585 WP_003153412.1 genetic competence negative regulator -
  U722_RS10795 (U722_11535) - 2287548..2288336 (-) 789 WP_024085540.1 metallophosphoesterase -
  U722_RS10800 (U722_11540) - 2288423..2288881 (-) 459 WP_007409443.1 YpbF family protein -
  U722_RS10805 (U722_11545) - 2288950..2289720 (-) 771 WP_003153409.1 LysM peptidoglycan-binding domain-containing protein -
  U722_RS10810 (U722_11550) - 2289698..2290285 (-) 588 WP_014305323.1 CPBP family intramembrane glutamic endopeptidase -
  U722_RS10815 (U722_11555) recS 2290300..2291790 (-) 1491 WP_014305324.1 RecQ family ATP-dependent DNA helicase Machinery gene
  U722_RS10820 (U722_11560) - 2291783..2292841 (-) 1059 WP_014305325.1 helix-turn-helix domain-containing protein -
  U722_RS10825 (U722_11565) - 2293110..2293358 (+) 249 WP_003153403.1 ferredoxin -
  U722_RS10830 (U722_11570) - 2293498..2294070 (-) 573 WP_003153402.1 ECF transporter S component -
  U722_RS10835 (U722_11575) serA 2294559..2296136 (+) 1578 WP_003153401.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56057.12 Da        Isoelectric Point: 6.3781

>NTDB_id=53373 U722_RS10815 WP_014305324.1 2290300..2291790(-) (recS) [Bacillus amyloliquefaciens LFB112]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKINRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTDDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIRKALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=53373 U722_RS10815 WP_014305324.1 2290300..2291790(-) (recS) [Bacillus amyloliquefaciens LFB112]
ATGACTGAGCTGCATAAAGCTTTATCCAGATATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGGAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCAAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCGGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGACAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAACAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCCGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCTGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGATCTGGAAGGCATTTTGGCCGTCATACGGGATGCCGGTACGGATGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAAGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAACCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAAAAGCGCTGCTGTCTTATTTTGATGAATCGTATGAGCCTGAAGGCCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGGAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685

Multiple sequence alignment