Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   U722_RS10105 Genome accession   NC_023073
Coordinates   2162830..2163966 (+) Length   378 a.a.
NCBI ID   WP_003153656.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2157830..2168966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS10075 (U722_10750) - 2157872..2158300 (+) 429 WP_024085498.1 hypothetical protein -
  U722_RS10080 (U722_10755) - 2158375..2158896 (+) 522 WP_024085499.1 hypothetical protein -
  U722_RS20235 (U722_10760) - 2159145..2159457 (+) 313 Protein_1977 ATP-dependent DNA ligase -
  U722_RS10090 (U722_10765) - 2159727..2160191 (+) 465 WP_024085500.1 hypothetical protein -
  U722_RS20315 (U722_10770) - 2160703..2160831 (-) 129 WP_024085501.1 hypothetical protein -
  U722_RS10095 (U722_10785) - 2161406..2161780 (+) 375 WP_024085504.1 YoqO family protein -
  U722_RS10100 (U722_10790) - 2162015..2162467 (-) 453 WP_024085505.1 hypothetical protein -
  U722_RS10105 (U722_10795) rapC 2162830..2163966 (+) 1137 WP_003153656.1 Rap family tetratricopeptide repeat protein Regulator
  U722_RS10110 (U722_10800) - 2163956..2164138 (+) 183 WP_003153655.1 hypothetical protein -
  U722_RS10115 (U722_10805) - 2164464..2165483 (+) 1020 Protein_1984 hypothetical protein -
  U722_RS10120 (U722_10810) - 2165544..2165903 (-) 360 WP_014305240.1 hypothetical protein -
  U722_RS10125 (U722_10815) - 2165909..2166376 (-) 468 WP_024085506.1 DUF4879 domain-containing protein -
  U722_RS20465 - 2166633..2166700 (+) 68 Protein_1987 putative holin-like toxin -
  U722_RS10130 (U722_10820) - 2166951..2167289 (-) 339 WP_014305242.1 hypothetical protein -
  U722_RS20240 - 2167503..2167661 (-) 159 WP_014305243.1 GNAT family N-acetyltransferase -
  U722_RS20245 - 2167695..2167955 (-) 261 WP_223151887.1 GNAT family N-acetyltransferase -
  U722_RS10140 (U722_10830) - 2168061..2168639 (-) 579 WP_024085507.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44598.15 Da        Isoelectric Point: 4.8529

>NTDB_id=53370 U722_RS10105 WP_003153656.1 2162830..2163966(+) (rapC) [Bacillus amyloliquefaciens LFB112]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=53370 U722_RS10105 WP_003153656.1 2162830..2163966(+) (rapC) [Bacillus amyloliquefaciens LFB112]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAATACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTACAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCGCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTTTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(191-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

46.296

100

0.463
  rapF Bacillus subtilis subsp. subtilis str. 168

45.669

100

0.46

Multiple sequence alignment