Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LCE25_RS08685 Genome accession   NZ_CP083888
Coordinates   1824929..1826356 (-) Length   475 a.a.
NCBI ID   WP_000980581.1    Uniprot ID   -
Organism   Escherichia coli strain NDM1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1819929..1831356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCE25_RS08655 (LCE25_08655) yeeZ 1819984..1820808 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  LCE25_RS08660 (LCE25_08660) yeeY 1820854..1821783 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LCE25_RS08665 (LCE25_08665) yoeI 1821998..1822060 (+) 63 WP_010723108.1 membrane protein YoeI -
  LCE25_RS08670 (LCE25_08670) plaP 1822050..1823408 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LCE25_RS08675 (LCE25_08675) tsuA 1823587..1824645 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  LCE25_RS08680 (LCE25_08680) tsuB 1824659..1824886 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LCE25_RS08685 (LCE25_08685) sbcB 1824929..1826356 (-) 1428 WP_000980581.1 exodeoxyribonuclease I Machinery gene
  LCE25_RS08690 (LCE25_08690) dacD 1826545..1827711 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LCE25_RS08695 (LCE25_08695) sbmC 1827830..1828303 (+) 474 WP_032224276.1 DNA gyrase inhibitor SbmC -
  LCE25_RS08700 (LCE25_08700) yeeA 1828501..1829559 (+) 1059 WP_001200891.1 FUSC family protein -
  LCE25_RS08705 (LCE25_08705) tmaR 1829731..1830060 (+) 330 WP_000450409.1 DUF496 family protein -
  LCE25_RS08710 (LCE25_08710) - 1830161..1830604 (-) 444 WP_069354235.1 EutP/PduV family microcompartment system protein -
  LCE25_RS08715 (LCE25_08715) pduU 1830609..1830959 (-) 351 WP_000211394.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6070

>NTDB_id=533686 LCE25_RS08685 WP_000980581.1 1824929..1826356(-) (sbcB) [Escherichia coli strain NDM1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=533686 LCE25_RS08685 WP_000980581.1 1824929..1826356(-) (sbcB) [Escherichia coli strain NDM1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579