Detailed information NTG0533642

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LCE23_RS22625
• Genome accession: NZ_CP083886
• Coordinates: 4502290..4503315 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain NDM2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4497290..4508315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCE23_RS22605 (LCE23_22605)	metJ	4498351..4498668 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LCE23_RS22610 (LCE23_22610)	yiiX	4498852..4499460 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LCE23_RS22615 (LCE23_22615)	rpmE	4499521..4499733 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LCE23_RS22620 (LCE23_22620)	priA	4499936..4502134 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
LCE23_RS22625 (LCE23_22625)	cytR	4502290..4503315 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LCE23_RS22630 (LCE23_22630)	ftsN	4503407..4504366 (+)	960	WP_000068828.1	cell division protein FtsN	-
LCE23_RS22635 (LCE23_22635)	hslV	4504459..4504989 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LCE23_RS22640 (LCE23_22640)	hslU	4504999..4506330 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LCE23_RS22645 (LCE23_22645)	menA	4506397..4507323 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LCE23_RS22650 (LCE23_22650)	rraA	4507416..4507901 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LCE23_RS22655 (LCE23_22655)	zapB	4507986..4508231 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=533642 LCE23_RS22625 WP_000644904.1 4502290..4503315(+) (cytR) [Escherichia coli strain NDM2]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=533642 LCE23_RS22625 WP_000644904.1 4502290..4503315(+) (cytR) [Escherichia coli strain NDM2]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628