Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   U722_RS07920 Genome accession   NC_023073
Coordinates   1629335..1630324 (+) Length   329 a.a.
NCBI ID   WP_003154301.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624335..1635324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS07905 (U722_08355) acpP 1624532..1624765 (+) 234 WP_003154310.1 acyl carrier protein -
  U722_RS07910 (U722_08360) rncS 1624904..1625653 (+) 750 WP_003154303.1 ribonuclease III -
  U722_RS07915 (U722_08365) smc 1625755..1629315 (+) 3561 WP_024085296.1 chromosome segregation protein SMC -
  U722_RS07920 (U722_08370) pilA 1629335..1630324 (+) 990 WP_003154301.1 signal recognition particle-docking protein FtsY Machinery gene
  U722_RS07925 (U722_08375) - 1630408..1631178 (+) 771 WP_024085297.1 phosphotransferase family protein -
  U722_RS07930 (U722_08380) - 1631300..1631632 (+) 333 WP_003154299.1 putative DNA-binding protein -
  U722_RS07935 (U722_08385) ffh 1631646..1632986 (+) 1341 WP_003154298.1 signal recognition particle protein -
  U722_RS07940 (U722_08390) rpsP 1633092..1633364 (+) 273 WP_003154296.1 30S ribosomal protein S16 -
  U722_RS07945 (U722_08395) - 1633364..1633609 (+) 246 WP_007611392.1 KH domain-containing protein -
  U722_RS07950 (U722_08400) - 1633700..1634086 (+) 387 WP_003154291.1 YlqD family protein -
  U722_RS07955 (U722_08405) rimM 1634091..1634615 (+) 525 WP_003154290.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36096.28 Da        Isoelectric Point: 5.0098

>NTDB_id=53355 U722_RS07920 WP_003154301.1 1629335..1630324(+) (pilA) [Bacillus amyloliquefaciens LFB112]
MSFFKKLKEKITKQTDSVSEKFKDGLEKTRNSFSNKVNELVSRYRKVDEDFFEELEEVLIGADVGFTTVMELIDELKKEV
KLKNIQDPQEVQSVISEKLVDIYNSGDEQISELNIQDGRLNVILLVGVNGVGKTTTIGKLAHKLKNEGKSVVLAAGDTFR
AGAIEQLEVWGERTGVPVIKQAAGSDPAAVIYDAVHAAKARGADVLICDTAGRLQNKVNLMKELEKVKRVIEREVPEAPH
EVLLALDATTGQNAMAQAKEFSKATNVTGIALTKLDGTAKGGIVLAIRNELHIPVKLVGLGEKVDDLQRFDAESYVYGLF
SDLVEKAED

Nucleotide


Download         Length: 990 bp        

>NTDB_id=53355 U722_RS07920 WP_003154301.1 1629335..1630324(+) (pilA) [Bacillus amyloliquefaciens LFB112]
ATGAGCTTTTTTAAAAAATTAAAAGAGAAAATCACGAAACAGACAGACTCCGTCTCTGAAAAATTTAAAGATGGTCTTGA
AAAAACAAGAAATTCCTTCTCAAATAAAGTGAACGAACTCGTCTCCCGCTACCGGAAAGTCGACGAGGATTTCTTCGAGG
AGCTTGAGGAAGTGCTGATTGGCGCTGACGTAGGTTTTACAACCGTCATGGAGCTGATTGATGAGCTCAAAAAAGAAGTG
AAGCTGAAAAACATTCAGGATCCTCAGGAAGTGCAGTCCGTCATTTCTGAAAAGCTTGTCGACATTTATAACAGCGGCGA
CGAACAGATTTCTGAATTAAATATTCAGGACGGGCGCCTGAACGTTATTCTGCTTGTCGGGGTAAACGGCGTCGGAAAAA
CGACAACGATCGGAAAACTTGCCCATAAGCTGAAGAATGAAGGCAAATCCGTTGTGCTCGCTGCCGGAGACACTTTCAGA
GCCGGGGCGATTGAACAGCTTGAAGTGTGGGGGGAGCGTACAGGCGTGCCTGTCATTAAGCAGGCTGCCGGAAGCGACCC
TGCTGCGGTTATTTATGATGCCGTACACGCGGCTAAAGCAAGAGGAGCGGATGTGCTGATTTGTGATACGGCCGGCCGCC
TTCAGAATAAAGTTAACTTAATGAAAGAGCTTGAAAAGGTCAAACGCGTCATCGAACGCGAAGTGCCTGAGGCCCCGCAT
GAGGTTCTCCTTGCGCTGGACGCGACGACAGGCCAGAATGCGATGGCGCAGGCGAAAGAATTCTCCAAAGCGACGAATGT
GACGGGTATCGCATTAACGAAGCTTGACGGCACCGCAAAAGGCGGTATCGTCCTGGCGATCCGCAATGAGCTTCACATCC
CTGTGAAACTGGTCGGCCTCGGAGAAAAGGTTGACGATCTCCAGCGGTTTGATGCAGAATCTTACGTATACGGTCTCTTT
TCGGATTTAGTTGAAAAAGCCGAAGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(121-320)

SRP54-type protein, helical bundle domain (SRP54_N)

(33-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.333

91.185

0.413

Multiple sequence alignment