Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQN63_RS01680 Genome accession   NZ_CP069318
Coordinates   381459..382844 (+) Length   461 a.a.
NCBI ID   WP_016448587.1    Uniprot ID   A0AAX3SMY1
Organism   Delftia lacustris strain R54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 376459..387844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN63_RS01655 (JQN63_01660) lplT 377279..378580 (-) 1302 WP_016448591.1 lysophospholipid transporter LplT -
  JQN63_RS01660 (JQN63_01665) alr 378715..379818 (+) 1104 WP_016448590.1 alanine racemase -
  JQN63_RS01665 (JQN63_01670) - 379819..380259 (-) 441 WP_016448589.1 MarR family winged helix-turn-helix transcriptional regulator -
  JQN63_RS01670 (JQN63_01675) - 380356..381171 (+) 816 WP_016448588.1 siderophore-interacting protein -
  JQN63_RS01680 (JQN63_01685) radA 381459..382844 (+) 1386 WP_016448587.1 DNA repair protein RadA Machinery gene
  JQN63_RS01685 (JQN63_01690) - 382928..383374 (+) 447 WP_016448586.1 hypothetical protein -
  JQN63_RS01690 (JQN63_01695) - 383419..384357 (+) 939 WP_016448585.1 branched-chain amino acid transaminase -
  JQN63_RS01695 (JQN63_01700) - 384477..384686 (+) 210 WP_012202256.1 zinc-finger domain-containing protein -
  JQN63_RS01700 (JQN63_01705) - 384718..385578 (-) 861 WP_203400277.1 capsular polysaccharide synthesis protein -
  JQN63_RS31640 - 386313..386975 (+) 663 WP_236884530.1 O-antigen ligase family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48096.64 Da        Isoelectric Point: 7.6673

>NTDB_id=533485 JQN63_RS01680 WP_016448587.1 381459..382844(+) (radA) [Delftia lacustris strain R54]
MAKDKTTFICNACGGSSPRWLGKCPACGAWNSLIEAVAEPAGAGKNRLSQPQGYAGLANAQAVMPLSAIEAQDVARTPSG
IEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQL
EKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDT
VLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVD
QGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEV
GLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIPGLTVHAVERVDEAMNIVRGMG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=533485 JQN63_RS01680 WP_016448587.1 381459..382844(+) (radA) [Delftia lacustris strain R54]
ATGGCCAAAGACAAAACCACATTCATCTGCAATGCCTGCGGCGGCTCCAGCCCGCGCTGGCTGGGCAAGTGCCCGGCCTG
CGGGGCCTGGAATTCGCTGATCGAGGCCGTTGCCGAGCCTGCGGGCGCGGGCAAGAACCGGCTCAGCCAGCCGCAGGGCT
ATGCGGGCCTGGCCAATGCCCAGGCCGTGATGCCGCTGTCGGCCATCGAGGCCCAGGACGTGGCGCGCACGCCCAGCGGC
ATCGAGGAGCTGGACCGCGTGCTGGGCGGCGGCATTGTCGAAGGCGGCGTGGTGCTGATTGGTGGCGACCCCGGCATCGG
CAAGTCCACCCTGCTGCTGCAGGCCATGGATGCGCTGCACCGCGTGGGCTTGCCCACGCTGTATGTCACGGGCGAGGAAA
GCGGTGCCCAGGTCGCGCTGCGCTCGCGCCGCCTGGGGCTGGAGGCCAGCCAGGTCAATGTGCTGGCCGAGATCCAGCTG
GAGAAGATCCTCGCCACCATGGAGGCCACGCAGCCGGCCGTGGTCGTCATCGACTCCATTCAGACCGTGTACTCGGACCA
GCTGTCCTCGGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCACCTCACGCGCGCGGCCAAGACCACGGGCA
TCACCGTGATCCTGGTCGGCCATGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACC
GTGCTCTACTTCGAGGGCGACACGCACAGCAACTTCCGCCTCGTGCGCGCCATCAAGAACCGCTTTGGTGCCGTCAACGA
GATCGGCGTCTTCGCCATGACGGAGAAGGGCCTCAAGGGCGTCACCAACCCCAGCGCCATCTTCCTGTCCCAGCACAGCG
AGCCGGTGCCGGGCTCCTGCGTGCTGGTCACGCTGGAGGGCACGCGGCCCATGCTGGTGGAAATACAGGCCCTGGTCGAC
CAGGGCGGCCCCGCGCCCCGGCGCCTGTCCGTGGGCCTGGACCGGGACCGGCTGGCCATGCTGCTGGCCGTGCTCAGCCG
CCATGCGGGCGTGGCCTGCGCGGACCAGGATGTCTTCGTCAACGCCGTGGGCGGCGTGCGCATCAGCGAGCCTGCGGCCG
ACCTGGCCGTGATGCTGTCCATCACCTCCAGCCTGCGCGGCCGCGCCCTGCCCAAGGGATTCCTGGCCTTTGGCGAAGTG
GGCCTGGCCGGCGAAGTGCGCCCCGCGCCGCGCGGCCAGGAGCGCCTGAAGGAAGCCGCCAAGCTCGGCTTCACCATGGC
CGTGGTGCCCAAGGCCAATGCGCCCAAGAAGGCCATCCCCGGCCTGACCGTGCATGCCGTGGAGCGCGTGGACGAAGCCA
TGAACATCGTCCGAGGGATGGGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.915

0.482
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469
  radA Streptococcus pneumoniae Rx1

48.19

95.879

0.462
  radA Streptococcus pneumoniae D39

48.19

95.879

0.462
  radA Streptococcus pneumoniae R6

48.19

95.879

0.462
  radA Streptococcus pneumoniae TIGR4

48.19

95.879

0.462
  radA Streptococcus mitis SK321

48.961

93.926

0.46