Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   JQC68_RS07720 Genome accession   NZ_CP069308
Coordinates   1542605..1543282 (-) Length   225 a.a.
NCBI ID   WP_021113429.1    Uniprot ID   A0A836MB36
Organism   Glaesserella parasuis strain EHP1804     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537605..1548282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS07685 (JQC68_07680) - 1537981..1538451 (-) 471 WP_021113432.1 phosphatidylglycerophosphatase A -
  JQC68_RS07690 (JQC68_07685) thiL 1538454..1539422 (-) 969 WP_021112073.1 thiamine-phosphate kinase -
  JQC68_RS07695 (JQC68_07690) nusB 1539431..1539844 (-) 414 WP_021116599.1 transcription antitermination factor NusB -
  JQC68_RS07700 (JQC68_07695) comE 1539923..1541185 (-) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  JQC68_RS07705 (JQC68_07700) comD 1541195..1541581 (-) 387 WP_021112070.1 hypothetical protein Machinery gene
  JQC68_RS07710 (JQC68_07705) comC 1541581..1542111 (-) 531 WP_021113425.1 hypothetical protein Machinery gene
  JQC68_RS07715 (JQC68_07710) comB 1542108..1542629 (-) 522 WP_021113427.1 hypothetical protein Machinery gene
  JQC68_RS07720 (JQC68_07715) comA 1542605..1543282 (-) 678 WP_021113429.1 hypothetical protein Machinery gene
  JQC68_RS07725 (JQC68_07720) - 1543436..1545991 (+) 2556 WP_021119495.1 penicillin-binding protein 1A -
  JQC68_RS07730 (JQC68_07725) aroK 1546221..1546742 (+) 522 WP_015940157.1 shikimate kinase AroK -
  JQC68_RS07735 (JQC68_07730) aroB 1546757..1547845 (+) 1089 WP_021110495.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26255.27 Da        Isoelectric Point: 7.3026

>NTDB_id=533474 JQC68_RS07720 WP_021113429.1 1542605..1543282(-) (comA) [Glaesserella parasuis strain EHP1804]
MGKFFQFRTTPQLKPIQVGFFWQENTACIVYFEQEQPHTFYFSSKVEADSFLQQFPFNYQLIQGISHQHIWRKTLILPEL
HSHLKQAEQIIRVLKQSLPLALSEVNIDYHITPLAESHLCQLNLYALRKSNSFDPTAILDCELYCLLRAVGFLTKMTETQ
ILEHSFHIQDKFIHFQNQRIIVEKQNNSTKPIIEVDGLPQAQHLPHFYPYLIALGASLWNGKASI

Nucleotide


Download         Length: 678 bp        

>NTDB_id=533474 JQC68_RS07720 WP_021113429.1 1542605..1543282(-) (comA) [Glaesserella parasuis strain EHP1804]
ATGGGTAAATTCTTTCAATTTCGTACAACACCGCAACTCAAACCTATTCAAGTTGGCTTTTTCTGGCAAGAAAATACCGC
TTGTATCGTCTATTTTGAGCAAGAACAACCTCACACCTTTTACTTTTCAAGCAAAGTAGAAGCGGATAGTTTCCTACAAC
AATTTCCCTTTAACTATCAGCTTATTCAAGGCATTTCTCATCAGCATATCTGGCGAAAAACCTTAATACTGCCAGAGCTA
CATTCCCATTTAAAACAAGCTGAGCAAATCATTCGTGTACTCAAACAGAGCCTACCTTTAGCTTTATCTGAAGTAAACAT
TGATTACCACATTACCCCTTTAGCCGAAAGCCACCTTTGCCAGCTTAATCTATATGCCCTAAGAAAAAGCAACAGCTTTG
ACCCAACAGCTATTTTAGATTGCGAACTCTACTGCCTGCTACGAGCGGTAGGATTTCTGACAAAAATGACGGAAACGCAA
ATTCTTGAACACAGTTTCCACATTCAAGACAAATTTATTCACTTTCAAAATCAACGAATTATCGTCGAAAAGCAGAATAA
TAGCACCAAACCAATCATTGAAGTGGACGGCTTGCCCCAAGCTCAACATCTTCCCCACTTTTATCCTTATCTCATTGCAT
TAGGAGCAAGTTTATGGAATGGCAAGGCATCAATCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MB36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Glaesserella parasuis strain SC1401

100

100

1