Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   JQC68_RS07705 Genome accession   NZ_CP069308
Coordinates   1541195..1541581 (-) Length   128 a.a.
NCBI ID   WP_021112070.1    Uniprot ID   A0A084EH22
Organism   Glaesserella parasuis strain EHP1804     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536195..1546581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC68_RS07675 (JQC68_07670) trxA 1536739..1537053 (-) 315 WP_015940165.1 thioredoxin -
  JQC68_RS07680 (JQC68_07675) - 1537350..1537979 (-) 630 WP_015940164.1 LysE family transporter -
  JQC68_RS07685 (JQC68_07680) - 1537981..1538451 (-) 471 WP_021113432.1 phosphatidylglycerophosphatase A -
  JQC68_RS07690 (JQC68_07685) thiL 1538454..1539422 (-) 969 WP_021112073.1 thiamine-phosphate kinase -
  JQC68_RS07695 (JQC68_07690) nusB 1539431..1539844 (-) 414 WP_021116599.1 transcription antitermination factor NusB -
  JQC68_RS07700 (JQC68_07695) comE 1539923..1541185 (-) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  JQC68_RS07705 (JQC68_07700) comD 1541195..1541581 (-) 387 WP_021112070.1 hypothetical protein Machinery gene
  JQC68_RS07710 (JQC68_07705) comC 1541581..1542111 (-) 531 WP_021113425.1 hypothetical protein Machinery gene
  JQC68_RS07715 (JQC68_07710) comB 1542108..1542629 (-) 522 WP_021113427.1 hypothetical protein Machinery gene
  JQC68_RS07720 (JQC68_07715) comA 1542605..1543282 (-) 678 WP_021113429.1 hypothetical protein Machinery gene
  JQC68_RS07725 (JQC68_07720) - 1543436..1545991 (+) 2556 WP_021119495.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 15006.18 Da        Isoelectric Point: 5.1421

>NTDB_id=533471 JQC68_RS07705 WP_021112070.1 1541195..1541581(-) (comD) [Glaesserella parasuis strain EHP1804]
MRLCFFYFIFLSAVTMADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDK
KQLIDLYPDDYLSHSFIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=533471 JQC68_RS07705 WP_021112070.1 1541195..1541581(-) (comD) [Glaesserella parasuis strain EHP1804]
ATGCGATTATGCTTTTTCTACTTTATCTTTCTAAGTGCTGTCACTATGGCAGATCCTTTTTATGCTAAGGATAACGCCCA
AGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTGTATGCCAACGGACAAGGTGAATGAAATTAATCTCA
CCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCGATGATAAAATCCGAGCCATTTTTTTAGATGATAAA
AAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCCTTTATTCAAATTAAAGAAATTAATTTTAAATCTGT
TAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAAATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A084EH22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

98.23

88.281

0.867