Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LCE22_RS08660 Genome accession   NZ_CP083877
Coordinates   1814057..1815484 (-) Length   475 a.a.
NCBI ID   WP_000980552.1    Uniprot ID   -
Organism   Escherichia coli strain NDM4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809057..1820484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCE22_RS08625 (LCE22_08625) hisL 1809642..1809692 (-) 51 WP_001364200.1 his operon leader peptide -
  LCE22_RS08630 (LCE22_08630) yefM 1809975..1810226 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  LCE22_RS08635 (LCE22_08635) yoeB 1810223..1810477 (+) 255 WP_000767832.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  LCE22_RS08640 (LCE22_08640) yeeZ 1810560..1811384 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LCE22_RS08645 (LCE22_08645) yeeY 1811430..1812359 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  LCE22_RS08650 (LCE22_08650) yoeI 1812573..1812635 (+) 63 WP_097433929.1 membrane protein YoeI -
  LCE22_RS08655 (LCE22_08655) plaP 1812625..1813983 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LCE22_RS08660 (LCE22_08660) sbcB 1814057..1815484 (-) 1428 WP_000980552.1 exodeoxyribonuclease I Machinery gene
  LCE22_RS08665 (LCE22_08665) dacD 1815693..1816859 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LCE22_RS08670 (LCE22_08670) sbmC 1816978..1817451 (+) 474 WP_061353310.1 DNA gyrase inhibitor SbmC -
  LCE22_RS08675 (LCE22_08675) yeeA 1817649..1818707 (+) 1059 WP_094336854.1 FUSC family protein -
  LCE22_RS08680 (LCE22_08680) tmaR 1818879..1819208 (+) 330 WP_000450409.1 DUF496 family protein -
  LCE22_RS08685 (LCE22_08685) - 1819309..1819674 (-) 366 WP_224434088.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54465.75 Da        Isoelectric Point: 5.4700

>NTDB_id=533445 LCE22_RS08660 WP_000980552.1 1814057..1815484(-) (sbcB) [Escherichia coli strain NDM4]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=533445 LCE22_RS08660 WP_000980552.1 1814057..1815484(-) (sbcB) [Escherichia coli strain NDM4]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGCTGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGTAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585