Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   JOJ89_RS15380 Genome accession   NZ_CP069296
Coordinates   2983616..2984374 (-) Length   252 a.a.
NCBI ID   WP_203288279.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2978616..2989374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS15355 - 2979267..2979836 (-) 570 WP_203288273.1 Maf family protein -
  JOJ89_RS15360 - 2979996..2981024 (-) 1029 WP_203288275.1 SPOR domain-containing protein -
  JOJ89_RS15365 - 2981142..2981969 (-) 828 WP_035319196.1 hypothetical protein -
  JOJ89_RS15370 - 2981950..2982567 (-) 618 WP_051865417.1 PilN domain-containing protein -
  JOJ89_RS15375 pilM 2982568..2983599 (-) 1032 WP_203288277.1 pilus assembly protein PilM -
  JOJ89_RS15380 comC 2983616..2984374 (-) 759 WP_203288279.1 A24 family peptidase Machinery gene
  JOJ89_RS15385 - 2984374..2984784 (-) 411 WP_203288281.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  JOJ89_RS15390 - 2984891..2986096 (-) 1206 WP_203288283.1 type II secretion system F family protein -
  JOJ89_RS15395 - 2986096..2987136 (-) 1041 WP_203290361.1 type IV pilus twitching motility protein PilT -
  JOJ89_RS15400 - 2987142..2988797 (-) 1656 WP_242524619.1 ATPase, T2SS/T4P/T4SS family -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 27063.81 Da        Isoelectric Point: 9.6667

>NTDB_id=533409 JOJ89_RS15380 WP_203288279.1 2983616..2984374(-) (comC) [Metabacillus sp. cB07]
MVTFLFFIVTYGLLLGSFYNVVGLRVPMKQSIVAPRSACPGCGHTLTAGELIPVVSYVLQGGKCKKCKARISPLYPFVEG
MTALLFAAAALLLGWTGELAVALTLISLFMIIFVSDVKYMVIPDKVLLFFGGLLVFERILIPLSPWWDPLAGAAAGFSLL
YAIAFVTRGKGMGGGDIKLFAVLGLALGWKLVLLAFFLSCLAGSLAGGIAMLLGKAKRKEPMPFGPSIMAGTLAAYFFGE
QLIDWYIRLIGY

Nucleotide


Download         Length: 759 bp        

>NTDB_id=533409 JOJ89_RS15380 WP_203288279.1 2983616..2984374(-) (comC) [Metabacillus sp. cB07]
ATGGTAACTTTTTTATTTTTCATAGTTACTTACGGCCTCCTACTAGGCTCCTTCTACAACGTAGTCGGCCTCCGTGTTCC
AATGAAACAATCCATAGTCGCACCACGTTCCGCGTGTCCGGGGTGCGGACATACATTAACAGCAGGCGAGCTTATTCCTG
TTGTTTCTTATGTTTTACAGGGCGGTAAGTGCAAAAAATGCAAAGCCCGCATCTCTCCGCTGTATCCGTTTGTGGAAGGA
ATGACGGCGCTGCTTTTTGCAGCGGCGGCTTTGCTTTTGGGGTGGACAGGGGAACTGGCTGTTGCTCTGACGCTTATTTC
GCTGTTTATGATTATCTTTGTGTCTGATGTGAAATATATGGTGATCCCAGATAAAGTGCTGCTGTTTTTCGGCGGACTAT
TGGTTTTTGAAAGAATTTTAATTCCGCTTTCGCCTTGGTGGGATCCGCTTGCAGGCGCTGCAGCCGGATTTTCGCTGCTT
TATGCGATTGCTTTCGTGACGAGGGGCAAAGGAATGGGCGGCGGGGATATCAAGCTTTTTGCCGTTCTTGGCCTTGCTCT
TGGATGGAAGCTTGTTCTGCTTGCCTTCTTTCTCTCGTGTCTCGCCGGCTCGCTTGCCGGAGGAATAGCGATGCTTCTTG
GAAAAGCAAAGCGGAAGGAGCCGATGCCGTTCGGCCCTTCCATCATGGCAGGGACTCTTGCAGCCTACTTTTTTGGAGAA
CAATTAATAGACTGGTATATCCGTTTGATCGGTTACTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(104-206)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

48.594

98.81

0.48