Detailed information NTG0533400

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LCE27_RS21545
• Genome accession: NZ_CP083872
• Coordinates: 4467744..4468769 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain NDM5
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4462744..4473769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCE27_RS21525 (LCE27_21525)	metJ	4463805..4464122 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LCE27_RS21530 (LCE27_21530)	yiiX	4464306..4464914 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LCE27_RS21535 (LCE27_21535)	rpmE	4464975..4465187 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LCE27_RS21540 (LCE27_21540)	priA	4465390..4467588 (+)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
LCE27_RS21545 (LCE27_21545)	cytR	4467744..4468769 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LCE27_RS21550 (LCE27_21550)	ftsN	4468861..4469820 (+)	960	WP_000068828.1	cell division protein FtsN	-
LCE27_RS21555 (LCE27_21555)	hslV	4469913..4470443 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LCE27_RS21560 (LCE27_21560)	hslU	4470453..4471784 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LCE27_RS21565 (LCE27_21565)	menA	4471851..4472777 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LCE27_RS21570 (LCE27_21570)	rraA	4472870..4473355 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LCE27_RS21575 (LCE27_21575)	zapB	4473440..4473685 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=533400 LCE27_RS21545 WP_000644904.1 4467744..4468769(+) (cytR) [Escherichia coli strain NDM5]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=533400 LCE27_RS21545 WP_000644904.1 4467744..4468769(+) (cytR) [Escherichia coli strain NDM5]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628