Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U722_RS06165 Genome accession   NC_023073
Coordinates   1232294..1232959 (+) Length   221 a.a.
NCBI ID   WP_003154892.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227294..1237959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS06140 (U722_06460) - 1227632..1228990 (+) 1359 WP_003154898.1 sensor histidine kinase -
  U722_RS06145 (U722_06465) - 1229110..1230045 (+) 936 WP_003154897.1 ABC transporter ATP-binding protein -
  U722_RS06150 (U722_06470) - 1230026..1230757 (+) 732 WP_003154895.1 ABC transporter permease -
  U722_RS06155 (U722_06475) - 1230775..1230966 (+) 192 WP_003154894.1 hypothetical protein -
  U722_RS06160 (U722_06480) - 1231032..1232282 (+) 1251 WP_003154893.1 sensor histidine kinase -
  U722_RS06165 (U722_06485) comA 1232294..1232959 (+) 666 WP_003154892.1 response regulator transcription factor Regulator
  U722_RS06170 (U722_06490) - 1233151..1233333 (+) 183 WP_003154891.1 plantaricin C family lantibiotic -
  U722_RS06175 (U722_06495) - 1233418..1236600 (+) 3183 WP_003154890.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25144.33 Da        Isoelectric Point: 6.2410

>NTDB_id=53340 U722_RS06165 WP_003154892.1 1232294..1232959(+) (comA) [Bacillus amyloliquefaciens LFB112]
MIKILLIDDHIGVAQGTKAILEKSNKMGVTILSCCKEVLNHLKHYEYDLILLDLYMPELNGMELSKMILRESPDQKIIIY
TGFDISVHFNLLVEVGVSGFISKSSTEEHMIKVIESVIEGDTIIPTHLFKQLRRTEANTFNIDKLEDRIRDITLNEREQD
ILAGVAEGMTNRELSAKLLISQRAVEYILTGVYNKLGVKSRTEALIKANRYSLISMKTIYE

Nucleotide


Download         Length: 666 bp        

>NTDB_id=53340 U722_RS06165 WP_003154892.1 1232294..1232959(+) (comA) [Bacillus amyloliquefaciens LFB112]
ATGATAAAGATTCTATTAATTGATGATCATATTGGTGTTGCTCAAGGGACAAAAGCCATTCTTGAAAAAAGCAATAAAAT
GGGAGTAACAATATTGTCTTGCTGTAAAGAAGTACTTAATCACCTTAAGCATTATGAGTATGACTTAATTTTACTTGATT
TATATATGCCGGAGTTAAATGGAATGGAATTGTCAAAAATGATTCTTAGAGAGAGCCCCGATCAAAAAATTATAATTTAT
ACTGGTTTTGATATCTCTGTGCATTTCAATCTTTTGGTTGAAGTTGGTGTTTCCGGGTTCATAAGTAAGTCATCAACAGA
AGAACATATGATAAAAGTAATTGAAAGTGTCATTGAGGGAGATACCATTATTCCTACTCATCTCTTTAAACAATTAAGAA
GAACAGAAGCAAATACGTTCAACATTGATAAGCTTGAAGATAGAATAAGAGATATTACTTTAAATGAAAGAGAACAAGAT
ATCTTAGCGGGCGTAGCGGAGGGAATGACAAACCGGGAATTATCAGCAAAGCTGTTGATCAGTCAAAGAGCGGTTGAATA
CATTCTTACTGGTGTGTACAACAAGCTCGGAGTAAAATCCAGAACAGAGGCACTGATCAAAGCAAATCGATATTCATTAA
TTTCTATGAAAACTATATATGAGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-207)

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

41.232

95.475

0.394

Multiple sequence alignment