Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | U722_RS06135 | Genome accession | NC_023073 |
| Coordinates | 1226964..1227635 (+) | Length | 223 a.a. |
| NCBI ID | WP_003154900.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens LFB112 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1221964..1232635
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U722_RS06120 (U722_06440) | - | 1222771..1223769 (+) | 999 | WP_024085185.1 | LacI family DNA-binding transcriptional regulator | - |
| U722_RS06125 (U722_06445) | - | 1223845..1225290 (+) | 1446 | WP_015388365.1 | tagaturonate reductase | - |
| U722_RS06130 (U722_06450) | - | 1225287..1226780 (+) | 1494 | WP_003154902.1 | UxaA family hydrolase | - |
| U722_RS06135 (U722_06455) | scnR | 1226964..1227635 (+) | 672 | WP_003154900.1 | response regulator transcription factor | Regulator |
| U722_RS06140 (U722_06460) | - | 1227632..1228990 (+) | 1359 | WP_003154898.1 | sensor histidine kinase | - |
| U722_RS06145 (U722_06465) | - | 1229110..1230045 (+) | 936 | WP_003154897.1 | ABC transporter ATP-binding protein | - |
| U722_RS06150 (U722_06470) | - | 1230026..1230757 (+) | 732 | WP_003154895.1 | ABC transporter permease | - |
| U722_RS06155 (U722_06475) | - | 1230775..1230966 (+) | 192 | WP_003154894.1 | hypothetical protein | - |
| U722_RS06160 (U722_06480) | - | 1231032..1232282 (+) | 1251 | WP_003154893.1 | sensor histidine kinase | - |
Sequence
Protein
Download Length: 223 a.a. Molecular weight: 26422.68 Da Isoelectric Point: 6.5038
>NTDB_id=53339 U722_RS06135 WP_003154900.1 1226964..1227635(+) (scnR) [Bacillus amyloliquefaciens LFB112]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ
Nucleotide
Download Length: 672 bp
>NTDB_id=53339 U722_RS06135 WP_003154900.1 1226964..1227635(+) (scnR) [Bacillus amyloliquefaciens LFB112]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
36 |
100 |
0.363 |