Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   JOJ89_RS05080 Genome accession   NZ_CP069296
Coordinates   1018474..1020291 (+) Length   605 a.a.
NCBI ID   WP_203289749.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013474..1025291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS05055 - 1013626..1014300 (-) 675 WP_029282607.1 TerC family protein -
  JOJ89_RS05060 mecA 1014623..1015291 (+) 669 WP_029282605.1 adaptor protein MecA -
  JOJ89_RS05065 cls 1015379..1016902 (+) 1524 WP_029565139.1 cardiolipin synthase -
  JOJ89_RS05070 - 1016997..1018172 (+) 1176 WP_203289747.1 competence protein CoiA family protein -
  JOJ89_RS05075 - 1018240..1018392 (+) 153 WP_203289748.1 hypothetical protein -
  JOJ89_RS05080 pepF 1018474..1020291 (+) 1818 WP_203289749.1 oligoendopeptidase F Regulator
  JOJ89_RS05085 - 1020461..1020637 (-) 177 WP_029282587.1 hypothetical protein -
  JOJ89_RS05090 - 1021022..1021894 (-) 873 WP_174434967.1 ClpXP adapter SpxH family protein -
  JOJ89_RS05095 - 1021894..1022304 (-) 411 WP_029282583.1 hypothetical protein -
  JOJ89_RS05100 - 1022499..1023137 (-) 639 WP_029282581.1 lytic transglycosylase domain-containing protein -
  JOJ89_RS05105 - 1023152..1023742 (-) 591 WP_029282580.1 CYTH domain-containing protein -
  JOJ89_RS05110 - 1023874..1024257 (+) 384 WP_029565146.1 hypothetical protein -
  JOJ89_RS05115 - 1024339..1024971 (+) 633 WP_029282578.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69795.19 Da        Isoelectric Point: 4.7885

>NTDB_id=533389 JOJ89_RS05080 WP_203289749.1 1018474..1020291(+) (pepF) [Metabacillus sp. cB07]
MTEQTAAKTLPKRSEVAAEDTWRLEDIFKNDEAWEAEFKEVKAALPKMEEYKGKLGDSADAFLEALTYQDSVMERLGKLY
TYAHMRYDQDTGNSHYQGLNDRAANLYTQASSVSSYMIPEILEMDEAKIKEFLQEKEELKVYGHTLDEINRQRPHVLSAE
QEAMLAQASDVLSSSSNTFGMLNNADLEFPSIKDEDGEEVEVTHGRYIRFLESEDRRVREDAFKAVYGTYDKYKNTFAST
LSGAVKKDNFYATVRNYSSAREAALSNNNIPEEVYENLVKTVNDNLHLLHKYIELRKKVLGLQELHMYDLFTPLVKDVKM
KVPYAEAKDYLLKGLAPLGEEYIAILNEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRNSQPYQYGHYSIFVAEVASTCNEALLNDYLLKTIDDKKKQLYLLNHYLEGFRGTVFRQTMFAEYEHAIHKKAQ
DGEPLTPDLLTELYYDLNKKYFGEHLTVDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVKRYIEFL
KSGSSDYPIEVLKKAGVDMTSKEPIEEALKVFEEKLNEMEQLLSE

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=533389 JOJ89_RS05080 WP_203289749.1 1018474..1020291(+) (pepF) [Metabacillus sp. cB07]
ATGACAGAACAAACAGCTGCAAAAACGCTGCCGAAACGGTCTGAAGTTGCTGCAGAAGATACGTGGAGACTGGAAGATAT
TTTTAAAAACGACGAGGCATGGGAAGCGGAATTTAAAGAGGTAAAAGCAGCCCTGCCGAAAATGGAAGAATATAAAGGAA
AGCTTGGAGATTCTGCAGATGCATTTCTTGAAGCCTTGACGTATCAGGATTCAGTAATGGAGAGACTTGGCAAGCTTTAT
ACATACGCGCATATGAGATACGATCAGGATACCGGGAACTCCCACTATCAGGGGCTGAACGACCGCGCCGCAAACCTTTA
TACGCAGGCAAGCAGCGTGTCATCCTACATGATACCGGAAATCCTTGAAATGGATGAAGCAAAGATTAAGGAATTTCTTC
AGGAAAAAGAAGAGCTGAAGGTGTACGGACATACACTGGATGAAATTAACCGCCAGCGCCCGCACGTTCTTTCAGCCGAG
CAGGAAGCCATGCTTGCACAGGCATCGGATGTTCTCAGTTCTTCAAGCAATACATTCGGCATGCTGAACAACGCAGATCT
TGAATTTCCATCCATCAAGGATGAAGACGGCGAAGAAGTGGAAGTCACTCACGGCCGCTATATCCGCTTTCTTGAAAGCG
AAGACCGCAGGGTAAGAGAAGACGCATTCAAAGCTGTATACGGCACGTATGACAAATACAAGAATACATTCGCAAGCACG
TTAAGCGGAGCCGTTAAAAAAGATAATTTCTACGCAACAGTAAGAAACTATTCTTCTGCACGGGAAGCGGCACTCAGCAA
CAACAACATTCCGGAAGAAGTGTACGAAAACCTTGTGAAAACAGTGAATGACAACCTGCACCTGCTGCACAAGTACATTG
AACTCCGCAAAAAAGTGCTGGGACTCCAAGAGCTTCACATGTATGATCTGTTCACACCGCTTGTAAAAGACGTGAAGATG
AAGGTGCCGTATGCAGAAGCAAAGGATTACTTGCTAAAAGGTCTTGCTCCTCTTGGAGAAGAGTACATCGCGATTTTAAA
CGAAGGGTTTGAAAACCGCTGGGTCGATGTTCATGAAAACAAAGGAAAACGAAGCGGCGCCTATTCTTCAGGCACGTACG
GAACAAATCCTTATATCCTCATGAACTGGCAGGATAACGTAAATAATCTCTTTACACTTGCACATGAATTCGGGCATTCT
GTGCACAGCTATTATACACGCAATTCACAGCCTTATCAGTACGGCCACTATTCAATCTTTGTCGCAGAGGTCGCCTCTAC
CTGCAACGAAGCACTATTGAATGATTACCTGCTGAAAACAATCGATGATAAAAAGAAACAGCTGTATCTGTTAAATCATT
ACCTTGAAGGATTCAGAGGCACGGTCTTCCGCCAGACGATGTTTGCGGAATATGAGCATGCCATTCATAAAAAAGCACAG
GACGGAGAGCCGCTGACTCCGGATCTTCTGACTGAACTGTACTATGATCTGAATAAAAAATACTTCGGCGAACATTTGAC
AGTAGATGAAGAAATCGGGCTTGAGTGGGCAAGAATACCTCATTTCTACTACAACTACTATGTCTATCAATATGCAACAG
GCTTCAGTGCAGCTACGGCGCTCAGCAAACAGATCCTTGAAGAAGGGGAGCCAGCTGTTAAACGATACATTGAGTTCCTT
AAATCAGGAAGCTCTGACTATCCAATTGAAGTTCTCAAAAAAGCCGGCGTAGACATGACTTCCAAAGAGCCGATTGAAGA
GGCGCTGAAGGTGTTTGAAGAGAAACTGAACGAAATGGAACAGCTTCTGTCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.239

97.686

0.481