Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   JOJ89_RS04935 Genome accession   NZ_CP069296
Coordinates   990474..991397 (+) Length   307 a.a.
NCBI ID   WP_277987882.1    Uniprot ID   -
Organism   Metabacillus sp. cB07     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 985474..996397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JOJ89_RS04905 argF 985861..986811 (+) 951 WP_203289740.1 ornithine carbamoyltransferase -
  JOJ89_RS04910 - 987063..987878 (-) 816 WP_029282667.1 undecaprenyl-diphosphate phosphatase -
  JOJ89_RS04915 - 988021..988200 (+) 180 WP_029282665.1 YjzC family protein -
  JOJ89_RS04920 - 988270..988455 (-) 186 WP_029282663.1 YjzD family protein -
  JOJ89_RS04925 - 988657..989385 (+) 729 WP_029282661.1 hypothetical protein -
  JOJ89_RS04930 - 989475..990332 (+) 858 WP_203289741.1 NAD(P)-dependent oxidoreductase -
  JOJ89_RS04935 med 990474..991397 (+) 924 WP_277987882.1 BMP family ABC transporter substrate-binding protein Regulator
  JOJ89_RS04940 comZ 991412..991597 (+) 186 WP_029282655.1 ComZ family protein Regulator
  JOJ89_RS04945 - 991633..991893 (-) 261 WP_029282653.1 hypothetical protein -
  JOJ89_RS04950 - 992057..992989 (+) 933 WP_029282651.1 beta-ketoacyl-ACP synthase III -
  JOJ89_RS04955 fabF 993026..994264 (+) 1239 WP_029282649.1 beta-ketoacyl-ACP synthase II -
  JOJ89_RS04960 - 994368..995123 (+) 756 WP_203289743.1 DUF2268 domain-containing protein -
  JOJ89_RS04965 - 995299..996285 (+) 987 WP_029282645.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34553.44 Da        Isoelectric Point: 4.0320

>NTDB_id=533384 JOJ89_RS04935 WP_277987882.1 990474..991397(+) (med) [Metabacillus sp. cB07]
MCLFFLAGCGQPRQNELEKVGLLVPDTISDQVWGTKGYKGLLKIQSQYGAEVFYKEGMNNEDAVREAVNEMSGKGVNLIF
GHGSEYEAYFEGLNEEYEDIRFVFFNGDADGENVTSLNFNANAMGFFGGMIAGEMTSTNKVGILAAYEWQPEIDGFYEGA
FYQNPDIEVKIQYVESWDDVRTALNYTDEMLAEGVDVVYPAGDGYNVPVIERMKEKGLYAIGYVSDQSDLGENTVLTSTI
QHVDRLYELVAKKYEAGELASGNLYFDFHDNVIEMGTYSPKVDKAFQEKLEQQIETYRQTDKLPNQL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=533384 JOJ89_RS04935 WP_277987882.1 990474..991397(+) (med) [Metabacillus sp. cB07]
ATGTGCCTTTTTTTTCTGGCTGGATGCGGACAACCCCGTCAGAATGAGCTGGAAAAAGTAGGCTTGCTTGTACCTGATAC
GATCAGCGATCAGGTTTGGGGAACGAAAGGATACAAAGGGCTTTTGAAAATACAATCGCAATACGGGGCCGAAGTTTTTT
ATAAAGAAGGCATGAATAATGAAGATGCCGTGAGAGAAGCCGTCAATGAGATGAGCGGCAAAGGAGTCAATCTCATTTTT
GGCCATGGAAGCGAATATGAAGCCTATTTTGAAGGGCTGAATGAAGAATATGAAGATATCCGGTTTGTTTTTTTCAATGG
TGATGCAGATGGAGAGAATGTGACGAGCCTTAACTTCAATGCGAATGCCATGGGGTTTTTTGGGGGCATGATCGCCGGGG
AAATGACGAGCACCAATAAAGTGGGAATTCTTGCTGCGTATGAATGGCAGCCGGAAATTGACGGTTTTTATGAAGGGGCT
TTCTATCAAAACCCTGATATTGAAGTGAAGATTCAATATGTCGAGAGCTGGGATGATGTGCGGACAGCTCTGAATTATAC
AGATGAAATGCTTGCCGAAGGCGTGGATGTTGTATATCCGGCAGGCGACGGCTATAATGTACCTGTAATCGAAAGAATGA
AAGAAAAAGGCCTGTATGCCATCGGCTATGTGTCCGATCAGTCAGACCTTGGAGAAAATACCGTTCTGACAAGCACAATT
CAGCATGTGGACAGGCTTTATGAGCTTGTTGCAAAGAAATACGAGGCCGGAGAACTGGCCAGCGGAAATCTCTATTTTGA
TTTTCATGATAATGTGATAGAAATGGGTACATACAGTCCGAAAGTCGACAAAGCCTTTCAGGAGAAATTAGAGCAGCAAA
TTGAAACCTACCGGCAAACAGACAAATTGCCAAATCAGCTGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(18-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

55.263

99.023

0.547