Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LCE24_RS20040 Genome accession   NZ_CP083869
Coordinates   3864138..3864578 (+) Length   146 a.a.
NCBI ID   WP_000360904.1    Uniprot ID   P36647
Organism   Escherichia coli strain NDM6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3859138..3869578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCE24_RS20020 (LCE24_20020) aroP 3860136..3861509 (+) 1374 WP_000969915.1 aromatic amino acid transporter AroP -
  LCE24_RS20025 (LCE24_20025) ampE 3861552..3862406 (-) 855 WP_000172005.1 beta-lactamase regulator AmpE -
  LCE24_RS20030 (LCE24_20030) ampD 3862403..3862954 (-) 552 WP_000923721.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LCE24_RS20035 (LCE24_20035) nadC 3863042..3863935 (+) 894 WP_001135174.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LCE24_RS20040 (LCE24_20040) pilA 3864138..3864578 (+) 441 WP_000360904.1 prepilin peptidase-dependent pilin Machinery gene
  LCE24_RS20045 (LCE24_20045) pilB 3864588..3865973 (+) 1386 WP_001025146.1 type II secretion system protein GspE Machinery gene
  LCE24_RS20050 (LCE24_20050) hofC 3865963..3867165 (+) 1203 WP_000157266.1 protein transport protein HofC -
  LCE24_RS20055 (LCE24_20055) guaC 3867200..3868243 (-) 1044 WP_001217338.1 GMP reductase -
  LCE24_RS20060 (LCE24_20060) - 3868399..3868443 (-) 45 WP_120795372.1 protein YacM -
  LCE24_RS20065 (LCE24_20065) coaE 3868468..3869088 (+) 621 WP_001269520.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15621.75 Da        Isoelectric Point: 4.3938

>NTDB_id=533309 LCE24_RS20040 WP_000360904.1 3864138..3864578(+) (pilA) [Escherichia coli strain NDM6]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=533309 LCE24_RS20040 WP_000360904.1 3864138..3864578(+) (pilA) [Escherichia coli strain NDM6]
ATGGACAAGCAACGCGGTTTTACACTTATCGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAGATACCTGCGACGGTGGCAGCAATGGCATTCCCTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGCAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P36647

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363