Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HMPREF1038_RS02720 Genome accession   NC_018630
Coordinates   502392..503123 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 497392..508123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS02700 (HMPREF1038_00549) - 499065..499418 (+) 354 WP_000115730.1 hypothetical protein -
  HMPREF1038_RS02705 (HMPREF1038_00550) dnaJ 499623..500759 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  HMPREF1038_RS12720 (HMPREF1038_00551) - 501081..501455 (-) 375 WP_001845059.1 hypothetical protein -
  HMPREF1038_RS02710 (HMPREF1038_00552) - 501617..501904 (-) 288 WP_000777760.1 hypothetical protein -
  HMPREF1038_RS02715 (HMPREF1038_00553) - 501914..502324 (-) 411 WP_001278301.1 HIT family protein -
  HMPREF1038_RS02720 (HMPREF1038_00554) pptA 502392..503123 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  HMPREF1038_RS02725 (HMPREF1038_00555) - 503120..504169 (+) 1050 WP_000653768.1 ABC transporter permease -
  HMPREF1038_RS02730 (HMPREF1038_00556) - 504337..504666 (-) 330 WP_000132583.1 hypothetical protein -
  HMPREF1038_RS02735 (HMPREF1038_00557) - 504943..505281 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  HMPREF1038_RS02740 (HMPREF1038_00558) comE/blpR 505286..506023 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  HMPREF1038_RS02745 (HMPREF1038_00559) - 506037..507377 (+) 1341 WP_001099894.1 sensor histidine kinase -
  HMPREF1038_RS02750 (HMPREF1038_00560) blpC 507421..507576 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=53330 HMPREF1038_RS02720 WP_000889923.1 502392..503123(+) (pptA) [Streptococcus pneumoniae gamPNI0373]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=53330 HMPREF1038_RS02720 WP_000889923.1 502392..503123(+) (pptA) [Streptococcus pneumoniae gamPNI0373]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment