Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LCE24_RS10005 Genome accession   NZ_CP083869
Coordinates   1814052..1815479 (-) Length   475 a.a.
NCBI ID   WP_000980552.1    Uniprot ID   -
Organism   Escherichia coli strain NDM6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809052..1820479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCE24_RS09970 (LCE24_09970) hisL 1809637..1809687 (-) 51 WP_001364200.1 his operon leader peptide -
  LCE24_RS09975 (LCE24_09975) yefM 1809970..1810221 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  LCE24_RS09980 (LCE24_09980) yoeB 1810218..1810472 (+) 255 WP_000767832.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  LCE24_RS09985 (LCE24_09985) yeeZ 1810555..1811379 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LCE24_RS09990 (LCE24_09990) yeeY 1811425..1812354 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  LCE24_RS09995 (LCE24_09995) yoeI 1812568..1812630 (+) 63 WP_097433929.1 membrane protein YoeI -
  LCE24_RS10000 (LCE24_10000) plaP 1812620..1813978 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LCE24_RS10005 (LCE24_10005) sbcB 1814052..1815479 (-) 1428 WP_000980552.1 exodeoxyribonuclease I Machinery gene
  LCE24_RS10010 (LCE24_10010) dacD 1815688..1816854 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LCE24_RS10015 (LCE24_10015) sbmC 1816973..1817446 (+) 474 WP_061353310.1 DNA gyrase inhibitor SbmC -
  LCE24_RS10020 (LCE24_10020) yeeA 1817644..1818702 (+) 1059 WP_094336854.1 FUSC family protein -
  LCE24_RS10025 (LCE24_10025) tmaR 1818874..1819203 (+) 330 WP_000450409.1 DUF496 family protein -
  LCE24_RS10030 (LCE24_10030) - 1819304..1819669 (-) 366 WP_224434088.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54465.75 Da        Isoelectric Point: 5.4700

>NTDB_id=533283 LCE24_RS10005 WP_000980552.1 1814052..1815479(-) (sbcB) [Escherichia coli strain NDM6]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=533283 LCE24_RS10005 WP_000980552.1 1814052..1815479(-) (sbcB) [Escherichia coli strain NDM6]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGCTGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGTAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585