Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQS73_RS18960 Genome accession   NZ_CP069280
Coordinates   3943011..3944369 (-) Length   452 a.a.
NCBI ID   WP_041349540.1    Uniprot ID   -
Organism   Clostridium botulinum strain IBCA10-7060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3938011..3949369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQS73_RS18940 (JQS73_18940) ispD 3939305..3939994 (-) 690 WP_041349536.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JQS73_RS18945 (JQS73_18945) - 3939996..3941096 (-) 1101 WP_003360172.1 PIN/TRAM domain-containing protein -
  JQS73_RS18950 (JQS73_18950) - 3941501..3941899 (+) 399 WP_041349538.1 hypothetical protein -
  JQS73_RS18955 (JQS73_18955) disA 3941931..3942992 (-) 1062 WP_003491261.1 DNA integrity scanning diadenylate cyclase DisA -
  JQS73_RS18960 (JQS73_18960) radA 3943011..3944369 (-) 1359 WP_041349540.1 DNA repair protein RadA Machinery gene
  JQS73_RS18965 (JQS73_18965) - 3944490..3946925 (-) 2436 WP_041349542.1 ATP-dependent Clp protease ATP-binding subunit -
  JQS73_RS18970 (JQS73_18970) - 3946927..3947970 (-) 1044 WP_047404180.1 protein arginine kinase -
  JQS73_RS18975 (JQS73_18975) - 3947975..3948502 (-) 528 WP_041349546.1 UvrB/UvrC motif-containing protein -
  JQS73_RS18980 (JQS73_18980) - 3948525..3948989 (-) 465 WP_080292242.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49797.79 Da        Isoelectric Point: 8.1297

>NTDB_id=533283 JQS73_RS18960 WP_041349540.1 3943011..3944369(-) (radA) [Clostridium botulinum strain IBCA10-7060]
MAKNKIVYICQQCGYESIKWLGKCPGCNSWNSMVEEEKQSTNKTIKNINIKSEPKIISTIKSSEYERLDTGINELNRVLG
GGIVKGSLTLISGSPGIGKSTILLQAANNIATKYGKILYVSGEESEEQIKMRADRLKVISKDIYILSETNVDIIKEHITT
INPKFVIIDSIQTLFKSELSSAPGTVSQVRQCSNDIMLISKSNNIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
QEFRILRTVKNRFGTTSEIGVFEMAGEGLLEISNPSAVFLEETEFQREGSVIIGIMEGTRPILIEIQALVSETKAYMPRR
TAVGVDTARLNLILAVLEKKLNIPFYNCDVYVNVVGGLDLTGTFADFGLALALLSSAKSKDIKLPKVLVIGEIGLTGEVR
PVSFCDRIVNEGIKMGFTNIIIPDRNKDKISVKNNVNLIGISSLREGINKVF

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=533283 JQS73_RS18960 WP_041349540.1 3943011..3944369(-) (radA) [Clostridium botulinum strain IBCA10-7060]
ATGGCTAAAAATAAAATTGTTTATATATGTCAACAATGTGGATATGAATCGATAAAATGGTTAGGAAAATGTCCAGGATG
CAATTCGTGGAATAGTATGGTAGAGGAAGAAAAGCAATCAACTAATAAGACTATAAAAAATATAAATATTAAATCAGAGC
CTAAAATAATATCTACAATAAAATCAAGTGAATACGAGAGATTAGATACTGGAATAAATGAACTGAATAGAGTCTTAGGC
GGTGGCATAGTTAAGGGCTCTTTAACTCTTATATCTGGATCGCCTGGCATAGGGAAGTCTACAATACTTTTACAAGCTGC
TAATAATATTGCTACTAAGTATGGTAAGATTTTATATGTGTCTGGAGAAGAATCAGAAGAGCAGATAAAAATGAGAGCAG
ACAGGCTTAAGGTGATATCAAAAGATATATACATACTTTCAGAGACAAATGTGGATATAATAAAAGAGCATATTACTACA
ATTAATCCTAAATTTGTTATAATAGATTCTATACAGACCCTTTTTAAAAGTGAACTATCTTCAGCTCCAGGTACTGTGTC
TCAAGTTAGGCAATGTTCTAACGATATTATGCTTATAAGTAAAAGCAATAACATACCTTTTTTTATAGTAGCACATGTTA
CAAAACAAGGAGAATTAGCAGGGCCTAGAGTTTTAGAACATATGGTAGATACGGTTTTATCCTTTGAAGGAGAAAGAACC
CAGGAATTTAGGATTTTAAGAACAGTAAAAAATCGTTTTGGAACTACAAGTGAAATTGGAGTTTTTGAAATGGCAGGAGA
AGGGTTATTAGAAATAAGCAATCCCTCTGCTGTATTTTTAGAAGAAACTGAATTTCAAAGGGAAGGTTCTGTAATAATAG
GTATAATGGAAGGGACCAGACCAATACTTATAGAAATACAAGCATTGGTAAGTGAAACGAAAGCTTATATGCCAAGAAGG
ACGGCAGTGGGAGTAGACACAGCTAGATTGAATTTAATATTAGCTGTGTTAGAAAAAAAATTAAATATACCTTTTTATAA
TTGTGATGTATATGTTAATGTAGTAGGAGGATTAGATTTAACAGGAACTTTTGCTGATTTCGGATTAGCATTAGCTTTAT
TATCTAGTGCTAAATCAAAAGATATAAAGTTACCTAAAGTTTTAGTGATTGGAGAAATAGGACTTACAGGAGAGGTTCGC
CCCGTAAGTTTTTGTGATAGAATAGTAAATGAAGGTATAAAAATGGGATTTACCAATATAATTATACCTGATAGAAATAA
AGACAAAATTTCTGTTAAAAATAATGTTAACCTAATTGGTATATCTTCTTTAAGAGAAGGTATTAATAAAGTATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

100

0.502
  radA Streptococcus pneumoniae Rx1

48.458

100

0.487
  radA Streptococcus pneumoniae D39

48.458

100

0.487
  radA Streptococcus pneumoniae R6

48.458

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.458

100

0.487
  radA Streptococcus mitis NCTC 12261

48.458

100

0.487
  radA Streptococcus mitis SK321

48.458

100

0.487