Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JQS73_RS05825 Genome accession   NZ_CP069280
Coordinates   1200332..1201285 (+) Length   317 a.a.
NCBI ID   WP_003361009.1    Uniprot ID   -
Organism   Clostridium botulinum strain IBCA10-7060     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1195332..1206285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQS73_RS05800 (JQS73_05800) - 1195461..1195697 (+) 237 WP_041348206.1 SHOCT domain-containing protein -
  JQS73_RS05805 (JQS73_05805) - 1195959..1196660 (+) 702 WP_041348204.1 response regulator transcription factor -
  JQS73_RS05810 (JQS73_05810) - 1196660..1198066 (+) 1407 WP_041348202.1 HAMP domain-containing sensor histidine kinase -
  JQS73_RS05815 (JQS73_05815) - 1198406..1199092 (-) 687 WP_041348200.1 DNA alkylation repair protein -
  JQS73_RS05820 (JQS73_05820) - 1199328..1200086 (-) 759 WP_041348198.1 AraC family transcriptional regulator -
  JQS73_RS05825 (JQS73_05825) ceuB 1200332..1201285 (+) 954 WP_003361009.1 ABC transporter permease Machinery gene
  JQS73_RS05830 (JQS73_05830) - 1201275..1202225 (+) 951 WP_041348196.1 iron chelate uptake ABC transporter family permease subunit -
  JQS73_RS05835 (JQS73_05835) - 1202222..1202977 (+) 756 WP_041348195.1 ATP-binding cassette domain-containing protein -
  JQS73_RS05840 (JQS73_05840) - 1203051..1203995 (+) 945 WP_041348193.1 siderophore ABC transporter substrate-binding protein -
  JQS73_RS05845 (JQS73_05845) - 1204197..1205198 (+) 1002 WP_041348191.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34902.31 Da        Isoelectric Point: 10.0382

>NTDB_id=533267 JQS73_RS05825 WP_003361009.1 1200332..1201285(+) (ceuB) [Clostridium botulinum strain IBCA10-7060]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIIVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=533267 JQS73_RS05825 WP_003361009.1 1200332..1201285(+) (ceuB) [Clostridium botulinum strain IBCA10-7060]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATCCCAAGACTTATAAGTATTATTA
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTTGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATACAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAGGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTAGGAAAA
ATACCATTTCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTACTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGGCTAGTTATTTATCCATATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505