Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   JQN89_RS05420 Genome accession   NZ_CP069278
Coordinates   1221203..1223041 (-) Length   612 a.a.
NCBI ID   WP_203385287.1    Uniprot ID   -
Organism   Bifidobacterium longum strain HN001     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1216203..1228041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN89_RS10545 - 1216510..1216887 (+) 378 WP_007052935.1 hypothetical protein -
  JQN89_RS05395 (JQN89_05395) rsmI 1216914..1217924 (-) 1011 WP_032746934.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JQN89_RS05410 (JQN89_05410) - 1218504..1219922 (-) 1419 WP_011068650.1 MFS transporter -
  JQN89_RS05415 (JQN89_05415) - 1220004..1221050 (+) 1047 WP_165507036.1 FAD:protein FMN transferase -
  JQN89_RS05420 (JQN89_05420) rcrQ 1221203..1223041 (-) 1839 WP_203385287.1 ABC transporter ATP-binding protein Regulator
  JQN89_RS05425 (JQN89_05425) rcrP 1223255..1225126 (-) 1872 WP_203385289.1 ABC transporter ATP-binding protein Regulator
  JQN89_RS05430 (JQN89_05430) - 1225313..1225834 (-) 522 WP_041473941.1 MarR family winged helix-turn-helix transcriptional regulator -
  JQN89_RS05435 (JQN89_05435) - 1226171..1226515 (-) 345 WP_172633839.1 hypothetical protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67066.45 Da        Isoelectric Point: 6.1011

>NTDB_id=533254 JQN89_RS05420 WP_203385287.1 1221203..1223041(-) (rcrQ) [Bifidobacterium longum strain HN001]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVSAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=533254 JQN89_RS05420 WP_203385287.1 1221203..1223041(-) (rcrQ) [Bifidobacterium longum strain HN001]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGTTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCTTCAGTCTCGGCCGGTCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGG
CGGTTCGATTTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCCGGCGTGACCAACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCATGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.082

96.078

0.52