Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JQC76_RS09560 Genome accession   NZ_CP069277
Coordinates   2117208..2118554 (+) Length   448 a.a.
NCBI ID   WP_024568384.1    Uniprot ID   X5K7C2
Organism   Elizabethkingia anophelis strain SEA01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2112208..2123554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQC76_RS09540 (JQC76_09540) - 2112743..2113321 (+) 579 WP_164504615.1 ribonuclease HII -
  JQC76_RS09545 (JQC76_09545) - 2113391..2113528 (+) 138 WP_021347346.1 bacteriocin -
  JQC76_RS09550 (JQC76_09550) yidC 2113582..2115363 (-) 1782 WP_078703891.1 membrane protein insertase YidC -
  JQC76_RS09555 (JQC76_09555) - 2115372..2116991 (-) 1620 WP_078703890.1 CTP synthase -
  JQC76_RS09560 (JQC76_09560) radA 2117208..2118554 (+) 1347 WP_024568384.1 DNA repair protein RadA Machinery gene
  JQC76_RS09565 (JQC76_09565) - 2118558..2119238 (+) 681 WP_078676442.1 class I SAM-dependent methyltransferase -
  JQC76_RS09570 (JQC76_09570) - 2119245..2119949 (+) 705 WP_078703889.1 VanW family protein -
  JQC76_RS09575 (JQC76_09575) - 2120334..2121167 (+) 834 WP_078703888.1 SDR family oxidoreductase -
  JQC76_RS09580 (JQC76_09580) - 2121164..2122156 (+) 993 WP_078703887.1 NAD-dependent epimerase/dehydratase family protein -
  JQC76_RS09585 (JQC76_09585) - 2122301..2122876 (+) 576 WP_021347355.1 ACP phosphodiesterase -
  JQC76_RS09590 (JQC76_09590) - 2122873..2123385 (-) 513 WP_024564627.1 DUF6702 family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49845.33 Da        Isoelectric Point: 6.7597

>NTDB_id=533242 JQC76_RS09560 WP_024568384.1 2117208..2118554(+) (radA) [Elizabethkingia anophelis strain SEA01]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEVIEKSTSKNYSGEKKQHIINIIEVNAQEEPRITTPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=533242 JQC76_RS09560 WP_024568384.1 2117208..2118554(+) (radA) [Elizabethkingia anophelis strain SEA01]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAGTTATAGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAGCAACATA
TTATTAACATTATCGAGGTCAACGCCCAGGAAGAACCAAGAATTACAACCCCGAGCGATGAGCTGAACCGTGTATTGGGA
GGTGGGATCGTACTAGGTTCTGTTACCTTAATTGGTGGTGAACCGGGAATCGGGAAGTCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAACGTGTTTTGTATGTCTCCGGAGAAGAAAGTGCTTCACAAATTAAAATGCGTGCAGACCGTCTTA
CCGATCTCCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGACAAGATTCTGCATGAAGCAAAAAAGCTTCAG
CCTCAGTTTATGATTCTGGACTCTATACAGACATTACATTCCAGCCTTATAGAAAGCTCACCGGGCACAGTTTCTCAGAT
TCGGGAATGTTCTTCAGAAATTATAAAGTTTGCTAAAGAAACCAATACTCCCGTGTTTCTGGTAGGCCATATCACCAAAG
ACGGACAAATTGCAGGTCCGAAAGTTCTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTGCTAAGAGCTAATAAAAACCGTTTTGGCTCTACGTCCGAAATTGGTATTTATGAAATGATATCACAGGGGCT
AAAAGAAATTAAAAATCCTTCTGAAATACTGATTACCAAAAAATTTGAAGAGCTATCCGGCAATTCTGTAGCTGTAACTT
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACCGCAGTATATGGTACTCCACAGAGAAGCTGC
ACAGGTTTCGATGCAAAAAGGCTCAATATGCTTCTGGCAGTTCTGGAAAAACGAGCAGGCTTCCAGCTTGGATCAAAAGA
TGTATTCCTGAATATAACCGGCGGTATCAAAACTGACGATCCGGCACTGGATTTAGCAGTTGTAGCCTCTATTCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTCGCTGGAGAAATAGGTCTTAGCGGAGAAATACGACCTGTTCCT
CAGATTGAACACCGTATCACAGAGGCCGAAAAACTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCCAA
AAGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGATTTTCATGAAAGACTATTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5K7C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.578

100

0.496
  radA Streptococcus pneumoniae Rx1

48.578

100

0.496
  radA Streptococcus pneumoniae R6

48.578

100

0.496
  radA Streptococcus pneumoniae TIGR4

48.578

100

0.496
  radA Streptococcus mitis NCTC 12261

48.571

100

0.493
  radA Streptococcus mitis SK321

48.352

100

0.491
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473