Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   JQR77_RS02355 Genome accession   NZ_CP069275
Coordinates   426348..426791 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EG007     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 421348..431791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQR77_RS02335 (JQR77_02320) - 421855..422616 (-) 762 WP_023909431.1 NUDIX domain-containing protein -
  JQR77_RS02340 (JQR77_02325) - 422680..423705 (-) 1026 WP_253269292.1 AAA family ATPase -
  JQR77_RS02345 (JQR77_02330) gdhA 424137..425489 (+) 1353 WP_002949856.1 NADP-specific glutamate dehydrogenase -
  JQR77_RS02350 (JQR77_02335) - 425747..426157 (+) 411 WP_011680804.1 peptide deformylase -
  JQR77_RS02355 (JQR77_02340) rcrR 426348..426791 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  JQR77_RS02360 (JQR77_02345) rcrP 426795..428609 (+) 1815 WP_014608025.1 ABC transporter ATP-binding protein Regulator
  JQR77_RS02365 (JQR77_02350) rcrQ 428599..430377 (+) 1779 WP_023909433.1 ABC transporter ATP-binding protein Regulator
  JQR77_RS02370 (JQR77_02355) - 430533..430904 (+) 372 WP_224103327.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=533195 JQR77_RS02355 WP_002945408.1 426348..426791(+) (rcrR) [Streptococcus thermophilus strain EG007]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=533195 JQR77_RS02355 WP_002945408.1 426348..426791(+) (rcrR) [Streptococcus thermophilus strain EG007]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537