Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Gromo_RS02140 Genome accession   NZ_CP069247
Coordinates   486482..487828 (-) Length   448 a.a.
NCBI ID   WP_231158820.1    Uniprot ID   -
Organism   Candidatus Gromoviella agglomerans strain Sp8-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 481482..492828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Gromo_RS02105 (Gromo_00434) secG 482181..482459 (-) 279 WP_274381149.1 preprotein translocase subunit SecG -
  Gromo_RS02115 (Gromo_00436) ndk 482721..483140 (+) 420 WP_231158816.1 nucleoside-diphosphate kinase -
  Gromo_RS02120 (Gromo_00437) miaA 483210..484055 (+) 846 WP_231158817.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  Gromo_RS02125 (Gromo_00438) - 484157..485140 (+) 984 WP_231158818.1 HemK/PrmC family methyltransferase -
  Gromo_RS02135 (Gromo_00440) - 485687..486376 (-) 690 WP_231158819.1 hypothetical protein -
  Gromo_RS02140 (Gromo_00441) radA 486482..487828 (-) 1347 WP_231158820.1 DNA repair protein RadA Machinery gene
  Gromo_RS02145 (Gromo_00442) - 487971..489164 (+) 1194 WP_231158821.1 MFS transporter -
  Gromo_RS02150 (Gromo_00443) - 489295..491433 (+) 2139 WP_231158822.1 V-type H(+)-translocating pyrophosphatase -
  Gromo_RS02155 (Gromo_00444) lipA 491720..492646 (+) 927 WP_231158823.1 lipoyl synthase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49570.22 Da        Isoelectric Point: 8.2361

>NTDB_id=533162 Gromo_RS02140 WP_231158820.1 486482..487828(-) (radA) [Candidatus Gromoviella agglomerans strain Sp8-1]
MKESKFACIKCGSIHSKWNGQCSECKEWNSIEMTKKSSLQSDKKLEFTTLNSTINLSERMITSYDEFNRVCGGGIVSGSI
LLIGGDPGIGKSTLLLHLASGMTNDVAYISGEESVEQICLRAKRLGISNSNVHIGAITDVASITTSIVNTNIKLVIIDSI
HTMKMNNVDSVPGSVNQIRSCTQEIMNFAKSENITFILVGHVTKDGMIAGPKLLEHMVDAVLYMEHFGSYRLLRSMKNRF
GSTSETGIFEMHHTGLKEIKNPSTLFLTEAHEGNGTCIFPSIEGERPILIEVQALVSKTNFQNPRRSVVGWEVNRVNTII
AVLESICQIDLNSHDIYVNMAGGLKISEPAADLAIATALISSKKQAKISRDWIIFGEIGLAGEIRQVTQQARRVTEAINI
GFKNIIMPYAKNLDIPVESIKKINIFYVKNMNEFLTQFQKNFVKSNQK

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=533162 Gromo_RS02140 WP_231158820.1 486482..487828(-) (radA) [Candidatus Gromoviella agglomerans strain Sp8-1]
ATGAAGGAGTCAAAATTTGCATGCATAAAATGCGGGTCAATTCACTCAAAATGGAACGGGCAATGCTCCGAATGCAAAGA
GTGGAATTCAATAGAAATGACAAAAAAATCATCTCTTCAAAGCGATAAAAAGTTAGAATTCACTACATTAAATAGCACAA
TTAATTTATCAGAAAGGATGATCACTAGCTATGATGAGTTCAACAGAGTTTGTGGAGGTGGAATTGTCTCTGGGTCAATT
CTTCTCATCGGAGGAGATCCAGGAATCGGAAAATCAACTCTCTTACTCCATTTAGCATCAGGAATGACCAATGATGTTGC
TTATATATCAGGAGAAGAATCCGTAGAACAAATATGTTTACGCGCAAAAAGATTAGGAATCTCAAACTCGAACGTTCACA
TCGGAGCAATCACTGATGTAGCATCTATCACAACATCTATAGTAAACACCAACATAAAATTAGTAATTATAGATTCCATT
CATACAATGAAAATGAATAATGTTGACTCAGTTCCAGGTAGTGTGAATCAAATTCGTTCGTGTACTCAAGAAATTATGAA
TTTCGCAAAATCAGAAAACATTACATTCATTTTAGTTGGACATGTCACTAAAGACGGAATGATCGCAGGACCAAAACTCC
TCGAGCACATGGTTGATGCAGTTCTGTATATGGAACATTTTGGTTCTTATAGACTTCTAAGATCAATGAAAAACAGATTT
GGATCTACATCTGAAACTGGAATATTTGAAATGCATCATACGGGCCTCAAGGAGATAAAGAATCCCTCAACATTATTCCT
AACAGAAGCACATGAAGGTAATGGCACATGCATATTCCCTAGCATAGAAGGAGAAAGACCTATATTAATCGAAGTACAAG
CACTCGTTTCTAAAACGAACTTTCAAAACCCAAGAAGATCTGTAGTTGGATGGGAAGTAAACAGAGTCAACACAATAATC
GCAGTATTAGAATCAATATGCCAAATCGATTTAAATTCTCATGACATATATGTAAATATGGCTGGAGGGTTGAAAATATC
AGAACCAGCTGCCGATTTAGCAATTGCTACCGCGTTAATTTCATCAAAAAAGCAAGCAAAAATCTCAAGAGATTGGATAA
TTTTTGGAGAAATCGGATTAGCTGGAGAAATAAGACAAGTAACTCAACAAGCACGAAGAGTCACTGAAGCAATAAATATA
GGATTTAAAAATATCATTATGCCATATGCAAAAAACCTCGATATTCCAGTTGAATCAATAAAAAAAATAAATATTTTTTA
TGTAAAAAATATGAACGAATTTCTGACACAGTTTCAAAAAAATTTCGTAAAGTCAAATCAAAAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-32)

AAA domain (AAA_25)

(68-207)

Subunit ChlI of Mg-chelatase (ChlI)

(314-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.903

100

0.484
  radA Streptococcus mitis NCTC 12261

43.4

99.777

0.433
  radA Streptococcus pneumoniae Rx1

43.177

99.777

0.431
  radA Streptococcus pneumoniae D39

43.177

99.777

0.431
  radA Streptococcus pneumoniae R6

43.177

99.777

0.431
  radA Streptococcus pneumoniae TIGR4

43.177

99.777

0.431
  radA Streptococcus mitis SK321

42.953

99.777

0.429