Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   U722_RS03815 Genome accession   NC_023073
Coordinates   790914..791630 (+) Length   238 a.a.
NCBI ID   WP_014304613.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens LFB112     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 785914..796630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS03785 (U722_03960) - 786091..786468 (+) 378 WP_003155597.1 DUF1992 domain-containing protein -
  U722_RS03790 (U722_03965) - 786478..786909 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  U722_RS03795 (U722_03970) - 786925..787167 (-) 243 WP_003155595.1 spore germination protein -
  U722_RS03800 (U722_03975) - 787182..787442 (-) 261 WP_007408496.1 spore germination protein -
  U722_RS03805 (U722_03980) treP 787714..789129 (+) 1416 WP_003155593.1 PTS system trehalose-specific EIIBC component -
  U722_RS03810 (U722_03985) treC 789205..790890 (+) 1686 WP_014304612.1 alpha,alpha-phosphotrehalase -
  U722_RS03815 (U722_03990) treR 790914..791630 (+) 717 WP_014304613.1 trehalose operon repressor Regulator
  U722_RS03820 (U722_03995) - 791764..792429 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  U722_RS03825 (U722_04000) - 792465..793226 (-) 762 WP_024085008.1 YibE/F family protein -
  U722_RS03830 (U722_04005) - 793223..794362 (-) 1140 WP_024085009.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27482.53 Da        Isoelectric Point: 7.3803

>NTDB_id=53315 U722_RS03815 WP_014304613.1 790914..791630(+) (treR) [Bacillus amyloliquefaciens LFB112]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTVADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=53315 U722_RS03815 WP_014304613.1 790914..791630(+) (treR) [Bacillus amyloliquefaciens LFB112]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGCGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGTGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42