Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K9O95_RS17650 Genome accession   NZ_CP083701
Coordinates   3599883..3600875 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain SUISSEKPC3NDM5     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3594883..3605875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O95_RS17640 (K9O95_17655) yieP 3597775..3598467 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  K9O95_RS17645 (K9O95_17660) mdtD 3598490..3599917 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  K9O95_RS17650 (K9O95_17665) cytR 3599883..3600875 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  K9O95_RS17655 (K9O95_17670) rbsK 3600879..3601808 (-) 930 WP_001300603.1 ribokinase -
  K9O95_RS17660 (K9O95_17675) rbsB 3601934..3602824 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  K9O95_RS17665 (K9O95_17680) rbsC 3602849..3603820 (-) 972 WP_072649936.1 ribose ABC transporter permease -
  K9O95_RS17670 (K9O95_17685) rbsA 3603825..3605330 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  K9O95_RS17675 (K9O95_17690) rbsD 3605338..3605757 (-) 420 WP_187798090.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=533126 K9O95_RS17650 WP_000224470.1 3599883..3600875(-) (cytR) [Escherichia coli strain SUISSEKPC3NDM5]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=533126 K9O95_RS17650 WP_000224470.1 3599883..3600875(-) (cytR) [Escherichia coli strain SUISSEKPC3NDM5]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACTGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364