Detailed information NTG0533027

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: JQC88_RS06075
• Genome accession: NZ_CP069215
• Coordinates: 1261221..1262195 (+)
• Length: 324 a.a.
• NCBI ID: WP_002495041.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain Z0118SE0269
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1256221..1267195

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQC88_RS06040	rpmG	1256701..1256850 (+)	150	WP_001830957.1	50S ribosomal protein L33	-
JQC88_RS06045	-	1257033..1257584 (+)	552	WP_001831001.1	5-formyltetrahydrofolate cyclo-ligase	-
JQC88_RS06050	-	1257585..1259045 (+)	1461	WP_001832757.1	rhomboid family intramembrane serine protease	-
JQC88_RS06055	-	1259029..1259229 (+)	201	WP_001831138.1	YqgQ family protein	-
JQC88_RS06060	-	1259229..1260215 (+)	987	WP_001831113.1	ROK family glucokinase	-
JQC88_RS06065	-	1260215..1260541 (+)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
JQC88_RS06070	-	1260541..1261164 (+)	624	WP_001831016.1	MBL fold metallo-hydrolase	-
JQC88_RS06075	comGA	1261221..1262195 (+)	975	WP_002495041.1	competence type IV pilus ATPase ComGA	Machinery gene
JQC88_RS06080	comGB	1262167..1263234 (+)	1068	WP_001831131.1	competence type IV pilus assembly protein ComGB	Machinery gene
JQC88_RS06085	comGC	1263252..1263569 (+)	318	WP_001831271.1	competence type IV pilus major pilin ComGC	Machinery gene
JQC88_RS06090	comGD	1263559..1263996 (+)	438	WP_001831025.1	competence type IV pilus minor pilin ComGD	-
JQC88_RS06095	-	1263983..1264276 (+)	294	WP_001831116.1	hypothetical protein	-
JQC88_RS06100	-	1264200..1264691 (+)	492	WP_002440043.1	competence type IV pilus minor pilin ComGF	-
JQC88_RS06105	-	1264856..1265368 (+)	513	WP_002485736.1	shikimate kinase	-
JQC88_RS06110	gcvT	1265586..1266677 (+)	1092	WP_001831107.1	glycine cleavage system aminomethyltransferase GcvT	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37356.47 Da
• Isoelectric Point: 8.8079

>NTDB_id=533027 JQC88_RS06075 WP_002495041.1 1261221..1262195(+) (comGA) [Staphylococcus epidermidis strain Z0118SE0269]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQYRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNYRQLVSELMFQSQINYFFEHNHSLPKNFTKLATHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=533027 JQC88_RS06075 WP_002495041.1 1261221..1262195(+) (comGA) [Staphylococcus epidermidis strain Z0118SE0269]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGTATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATCACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCACTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTATCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTAGCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.062	100	0.701
comGA	Staphylococcus aureus N315	70.062	100	0.701