Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   K3A99_RS03715 Genome accession   NZ_CP083671
Coordinates   786197..787279 (+) Length   360 a.a.
NCBI ID   WP_103146232.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25870     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781197..792279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A99_RS03695 (K3A99_000728) gdpS 781575..782645 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  K3A99_RS03700 (K3A99_000729) - 782963..784018 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  K3A99_RS03705 (K3A99_000730) - 784182..784823 (-) 642 WP_000192949.1 YigZ family protein -
  K3A99_RS03710 (K3A99_000731) fakB1 784967..785833 (+) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  K3A99_RS03715 (K3A99_000732) comFA 786197..787279 (+) 1083 WP_103146232.1 DEAD/DEAH box helicase Machinery gene
  K3A99_RS03720 (K3A99_000733) - 787272..787946 (+) 675 WP_001057962.1 ComF family protein -
  K3A99_RS03725 (K3A99_000734) hpf 788007..788579 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K3A99_RS03730 (K3A99_000735) secA 788993..791524 (+) 2532 WP_000506529.1 preprotein translocase subunit SecA -
  K3A99_RS03735 (K3A99_000736) - 791566..791685 (+) 120 WP_031774844.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42052.55 Da        Isoelectric Point: 9.6802

>NTDB_id=533004 K3A99_RS03715 WP_103146232.1 786197..787279(+) (comFA) [Staphylococcus aureus strain HL25870]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDVFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=533004 K3A99_RS03715 WP_103146232.1 786197..787279(+) (comFA) [Staphylococcus aureus strain HL25870]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGTCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367