Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LA346_RS10600 Genome accession   NZ_CP083627
Coordinates   2071100..2071909 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2066100..2076909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS10575 (LA346_10575) - 2067023..2068009 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  LA346_RS10580 (LA346_10580) - 2068298..2069041 (-) 744 Protein_2071 potassium channel family protein -
  LA346_RS10585 (LA346_10585) - 2069088..2069342 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LA346_RS10590 (LA346_10590) relB 2069344..2069586 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  LA346_RS10595 (LA346_10595) - 2069780..2071036 (+) 1257 WP_000530078.1 ISL3 family transposase -
  LA346_RS10600 (LA346_10600) vicX 2071100..2071909 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  LA346_RS10605 (LA346_10605) micB 2071911..2073260 (-) 1350 WP_000886213.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LA346_RS10610 (LA346_10610) yycF 2073253..2073957 (-) 705 WP_000722076.1 response regulator YycF -
  LA346_RS10615 (LA346_10615) mutY 2074013..2075188 (-) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  LA346_RS10935 - 2075285..2075410 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=532981 LA346_RS10600 WP_001289493.1 2071100..2071909(-) (vicX) [Streptococcus pneumoniae strain FDAARGOS_1508]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=532981 LA346_RS10600 WP_001289493.1 2071100..2071909(-) (vicX) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773